Magnesium in PDB 4b2p: Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Gtp

The structure of Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Gtp, PDB code: 4b2p was solved by M.E.Marsh, M.T.Ehebauer, D.Scott, C.Abell, T.L.Blundell, M.Hyvonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.59 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.320, 62.020, 87.170, 90.00, 90.00, 90.00
R / Rfree (%)	17.86 / 21.976

The binding sites of Magnesium atom in the Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Gtp (pdb code 4b2p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Gtp, PDB code: 4b2p:

Magnesium binding site 1 out of 1 in the Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Gtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Gtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1351 b:10.3 occ:1.00 O3G A:GTP1350 2.0 10.7 1.0 O2B A:GTP1350 2.1 11.1 1.0 O A:HOH2025 2.1 10.5 1.0 OG1 A:THR145 2.1 7.0 1.0 O A:HOH2023 2.1 11.8 1.0 O A:HOH2024 2.2 11.4 1.0 CB A:THR145 3.1 6.0 1.0 PG A:GTP1350 3.3 13.2 1.0 PB A:GTP1350 3.3 10.1 1.0 O3B A:GTP1350 3.5 10.2 1.0 N A:THR145 3.9 8.1 1.0 O A:HOH2044 4.0 15.1 1.0 O2A A:GTP1350 4.0 12.9 1.0 OD1 A:ASP238 4.0 13.4 1.0 O2G A:GTP1350 4.1 13.7 1.0 CA A:THR145 4.1 7.6 1.0 OD2 A:ASP238 4.1 9.9 1.0 CG2 A:THR145 4.2 8.8 1.0 O3A A:GTP1350 4.3 9.4 1.0 O1G A:GTP1350 4.4 14.8 1.0 O1B A:GTP1350 4.4 9.8 1.0 OG1 A:THR176 4.4 14.2 1.0 O A:HOH2035 4.5 26.9 1.0 CG A:ASP238 4.5 9.8 1.0 OE1 A:GLU174 4.6 37.4 1.0 PA A:GTP1350 4.6 12.0 1.0 CB A:LYS144 4.9 8.2 1.0 O1A A:GTP1350 4.9 11.6 1.0 CB A:THR176 4.9 12.3 1.0 CE A:LYS144 4.9 7.0 1.0 CG2 A:THR176 5.0 13.6 1.0

M.E.Marsh, D.E.Scott, M.T.Ehebauer, C.Abell, T.L.Blundell, M.Hyvonen. Atp Half-Sites in Rada and RAD51 Recombinases Bind Nucleotides Febs Open Bio V. 6 372 2016.
ISSN: ISSN 2211-5463
PubMed: 27419043
DOI: 10.1002/2211-5463.12052