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Magnesium in PDB 4bas: Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp

Enzymatic activity of Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp

All present enzymatic activity of Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp:
3.6.5.2;

Protein crystallography data

The structure of Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp, PDB code: 4bas was solved by G.R.Hemsworth, H.P.Price, D.F.Smith, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.42 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.920, 70.920, 80.928, 90.00, 90.00, 120.00
R / Rfree (%) 18.345 / 24.783

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp (pdb code 4bas). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp, PDB code: 4bas:

Magnesium binding site 1 out of 1 in 4bas

Go back to Magnesium Binding Sites List in 4bas
Magnesium binding site 1 out of 1 in the Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the ARL6 BBS3 Small Gtpase From Trypanosoma Brucei with Bound Nucleotide Analogue Gppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1183

b:19.9
occ:1.00
 O2B A:GNP1182 2.0 16.0 1.0
O1G A:GNP1182 2.0 20.1 1.0
O A:HOH2013 2.0 19.6 1.0
O A:HOH2012 2.1 22.9 1.0
OG1 A:THR21 2.1 20.9 1.0
OG1 A:THR40 2.2 17.6 1.0
CB A:THR40 3.2 25.1 1.0
CB A:THR21 3.2 16.7 1.0
PG A:GNP1182 3.2 23.8 1.0
PB A:GNP1182 3.4 21.1 1.0
N3B A:GNP1182 3.6 24.0 1.0
N A:THR40 3.8 21.7 1.0
N A:THR21 3.9 19.9 1.0
O3G A:GNP1182 4.0 21.4 1.0
CA A:THR40 4.1 21.3 1.0
OD1 A:ASP59 4.1 26.3 1.0
OD2 A:ASP59 4.1 22.9 1.0
O2A A:GNP1182 4.2 19.0 1.0
CA A:THR21 4.2 20.1 1.0
O A:HOH2022 4.2 33.1 1.0
CG2 A:THR21 4.3 19.1 1.0
O1B A:GNP1182 4.3 20.3 1.0
CG2 A:THR40 4.3 19.0 1.0
O3A A:GNP1182 4.4 15.1 1.0
O2G A:GNP1182 4.4 25.0 1.0
CG A:ASP59 4.5 16.3 1.0
O A:THR38 4.5 23.0 1.0
PA A:GNP1182 4.6 20.2 1.0
O A:MET60 4.6 21.6 1.0
CB A:LYS20 4.7 23.3 1.0
C A:ALA39 4.7 24.3 1.0
O1A A:GNP1182 4.8 20.4 1.0
CE A:LYS20 4.9 23.6 1.0
C A:LYS20 5.0 17.1 1.0

Reference:

G.R.Hemsworth, H.P.Price, D.F.Smith, K.S.Wilson. Crystal Structure of the Small Gtpase ARL6/BBS3 From Trypanosomabrucei. Protein Sci. V. 22 196 2013.
ISSN: ISSN 0961-8368
PubMed: 23184293
DOI: 10.1002/PRO.2198
Page generated: Mon Dec 14 09:11:24 2020

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