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Magnesium in PDB 4bep: Crystal Structure of the Legionella Pneumophila Fic Domain- Containing Effector Ankx Protein (Apo-Form)

Protein crystallography data

The structure of Crystal Structure of the Legionella Pneumophila Fic Domain- Containing Effector Ankx Protein (Apo-Form), PDB code: 4bep was solved by V.Campanacci, S.Mukherjee, C.R.Roy, J.Cherfils, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.00 / 3.14
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.268, 91.633, 239.151, 90.00, 90.00, 90.00
R / Rfree (%) 22.789 / 28.557

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Legionella Pneumophila Fic Domain- Containing Effector Ankx Protein (Apo-Form) (pdb code 4bep). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Legionella Pneumophila Fic Domain- Containing Effector Ankx Protein (Apo-Form), PDB code: 4bep:

Magnesium binding site 1 out of 1 in 4bep

Go back to Magnesium Binding Sites List in 4bep
Magnesium binding site 1 out of 1 in the Crystal Structure of the Legionella Pneumophila Fic Domain- Containing Effector Ankx Protein (Apo-Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Legionella Pneumophila Fic Domain- Containing Effector Ankx Protein (Apo-Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1486

b:39.3
occ:1.00
OG A:SER106 3.5 54.0 1.0
CB A:SER106 3.7 53.3 1.0
N A:PHE107 3.7 48.2 1.0
C A:SER106 3.8 50.6 1.0
O A:SER106 3.8 51.3 1.0
CA A:PHE107 3.9 46.7 1.0
CG A:PRO145 4.1 47.6 1.0
CD1 A:PHE182 4.1 45.7 1.0
C A:PHE107 4.3 45.5 1.0
CA A:SER106 4.4 53.2 1.0
CB A:PRO145 4.5 47.4 1.0
N A:PRO145 4.6 49.7 1.0
CE1 A:PHE182 4.6 44.8 1.0
CD A:PRO145 4.7 49.6 1.0
O A:PHE107 4.8 45.5 1.0
N A:GLY108 4.8 44.0 1.0
CB A:ALA140 4.9 47.3 1.0
CG A:PHE182 5.0 46.2 1.0
C A:GLY144 5.0 50.3 1.0
CA A:PRO145 5.0 49.1 1.0

Reference:

V.Campanacci, S.Mukherjee, C.R.Roy, J.Cherfils. Structure of the Legionella Effector Ankx Reveals the Mechanism of Phosphocholine Transfer By the Fic Domain. Embo J. V. 32 1469 2013.
ISSN: ISSN 0261-4189
PubMed: 23572077
DOI: 10.1038/EMBOJ.2013.82
Page generated: Mon Dec 14 09:11:53 2020

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