Magnesium in PDB 4bgd: Crystal Structure of BRR2 in Complex with the JAB1/Mpn Domain of PRP8

All present enzymatic activity of Crystal Structure of BRR2 in Complex with the JAB1/Mpn Domain of PRP8:
3.6.4.13;

The structure of Crystal Structure of BRR2 in Complex with the JAB1/Mpn Domain of PRP8, PDB code: 4bgd was solved by T.H.D.Nguyen, J.Li, K.Nagai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	92.37 / 3.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	107.640, 178.640, 180.400, 90.00, 90.00, 90.00
R / Rfree (%)	21.373 / 26.993

The binding sites of Magnesium atom in the Crystal Structure of BRR2 in Complex with the JAB1/Mpn Domain of PRP8 (pdb code 4bgd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of BRR2 in Complex with the JAB1/Mpn Domain of PRP8, PDB code: 4bgd:

Magnesium binding site 1 out of 1 in the Crystal Structure of BRR2 in Complex with the JAB1/Mpn Domain of PRP8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of BRR2 in Complex with the JAB1/Mpn Domain of PRP8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3165 b:86.5 occ:1.00 O A:HOH3008 2.2 95.1 1.0 O A:HOH3012 2.2 83.1 1.0 O A:HOH3007 2.2 86.2 1.0 O A:HOH3011 2.2 92.7 1.0 O A:HOH3009 2.2 88.7 1.0 O3B A:ADP3164 2.4 89.9 1.0 O1B A:ADP3164 3.4 98.5 1.0 PB A:ADP3164 3.4 0.1 1.0 OD1 A:ASP1474 3.8 78.7 1.0 OD1 A:ASP1475 3.9 87.8 1.0 OG1 A:THR1377 4.1 0.9 1.0 O2A A:ADP3164 4.2 90.6 1.0 OD2 A:ASP1475 4.3 0.9 1.0 OD2 A:ASP1474 4.3 82.7 1.0 CG A:ASP1474 4.4 84.6 1.0 CG A:ASP1475 4.5 92.8 1.0 CE A:LYS1404 4.5 0.5 1.0 O2B A:ADP3164 4.5 87.1 1.0 O3A A:ADP3164 4.6 0.2 1.0 NZ A:LYS1404 4.6 0.3 1.0 CE A:LYS1376 4.6 98.0 1.0 PA A:ADP3164 4.7 0.6 1.0 O1A A:ADP3164 4.7 0.2 1.0 CB A:LYS1376 4.9 96.2 1.0

T.H.D.Nguyen, J.Li, W.P.Galej, H.Oshikane, A.J.Newman, K.Nagai. Structural Basis of BRR2-PRP8 Interactions and Implications For U5 Snrnp Biogenesis and the Spliceosome Active Site Structure V. 21 910 2013.
ISSN: ISSN 0969-2126
PubMed: 23727230
DOI: 10.1016/J.STR.2013.04.017