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Magnesium in PDB 4bjo: Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State

Enzymatic activity of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State

All present enzymatic activity of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State:
3.1.3.48;

Protein crystallography data

The structure of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State, PDB code: 4bjo was solved by P.W.Kenny, J.Newman, T.S.Peat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.60 / 2.06
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.620, 66.765, 68.771, 90.00, 95.01, 90.00
R / Rfree (%) 21.529 / 23.932

Other elements in 4bjo:

The structure of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State (pdb code 4bjo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State, PDB code: 4bjo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4bjo

Go back to Magnesium Binding Sites List in 4bjo
Magnesium binding site 1 out of 2 in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1283

b:50.5
occ:1.00
O A:HOH2069 2.2 44.5 1.0
O A:HOH2071 2.2 44.5 1.0
O A:HOH2051 2.2 39.1 1.0
O A:HOH2070 2.2 52.9 1.0
OE1 A:GLU130 3.6 44.5 1.0
OE2 A:GLU130 3.6 37.7 1.0
CD A:GLU130 4.0 37.6 1.0
OE1 A:GLU129 4.3 35.2 1.0
CG A:LYS128 5.0 50.7 1.0

Magnesium binding site 2 out of 2 in 4bjo

Go back to Magnesium Binding Sites List in 4bjo
Magnesium binding site 2 out of 2 in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1286

b:72.4
occ:1.00
O A:HIS54 3.6 39.3 1.0
ND1 A:HIS54 4.1 40.2 1.0
C A:HIS54 4.5 42.0 1.0
CB A:HIS54 4.6 38.8 1.0
O A:HOH2015 4.8 42.5 1.0
CG A:HIS54 4.8 36.3 1.0
CA A:HIS54 5.0 41.2 1.0

Reference:

P.W.Kenny, J.Newman, T.S.Peat. Nitrate in the Active Site of Protein Tyrosine Phosphatase 1B Is A Putative Mimetic of the Transition State. Acta Crystallogr.,Sect.D V. 70 565 2014.
ISSN: ISSN 0907-4449
PubMed: 24531490
DOI: 10.1107/S1399004713031052
Page generated: Thu Aug 15 16:29:06 2024

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