Atomistry » Magnesium » PDB 4be7-4brn » 4bjo
Atomistry »
  Magnesium »
    PDB 4be7-4brn »
      4bjo »

Magnesium in PDB 4bjo: Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State

Enzymatic activity of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State

All present enzymatic activity of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State:
3.1.3.48;

Protein crystallography data

The structure of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State, PDB code: 4bjo was solved by P.W.Kenny, J.Newman, T.S.Peat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.60 / 2.06
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.620, 66.765, 68.771, 90.00, 95.01, 90.00
R / Rfree (%) 21.529 / 23.932

Other elements in 4bjo:

The structure of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State (pdb code 4bjo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State, PDB code: 4bjo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4bjo

Go back to Magnesium Binding Sites List in 4bjo
Magnesium binding site 1 out of 2 in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1283

b:50.5
occ:1.00
O A:HOH2069 2.2 44.5 1.0
O A:HOH2071 2.2 44.5 1.0
O A:HOH2051 2.2 39.1 1.0
O A:HOH2070 2.2 52.9 1.0
OE1 A:GLU130 3.6 44.5 1.0
OE2 A:GLU130 3.6 37.7 1.0
CD A:GLU130 4.0 37.6 1.0
OE1 A:GLU129 4.3 35.2 1.0
CG A:LYS128 5.0 50.7 1.0

Magnesium binding site 2 out of 2 in 4bjo

Go back to Magnesium Binding Sites List in 4bjo
Magnesium binding site 2 out of 2 in the Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nitrate in the Active Site of PTP1B Is A Putative Mimetic of the Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1286

b:72.4
occ:1.00
O A:HIS54 3.6 39.3 1.0
ND1 A:HIS54 4.1 40.2 1.0
C A:HIS54 4.5 42.0 1.0
CB A:HIS54 4.6 38.8 1.0
O A:HOH2015 4.8 42.5 1.0
CG A:HIS54 4.8 36.3 1.0
CA A:HIS54 5.0 41.2 1.0

Reference:

P.W.Kenny, J.Newman, T.S.Peat. Nitrate in the Active Site of Protein Tyrosine Phosphatase 1B Is A Putative Mimetic of the Transition State. Acta Crystallogr.,Sect.D V. 70 565 2014.
ISSN: ISSN 0907-4449
PubMed: 24531490
DOI: 10.1107/S1399004713031052
Page generated: Mon Dec 14 09:12:05 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy