Atomistry » Magnesium » PDB 4brq-4c2y » 4byf
Atomistry »
  Magnesium »
    PDB 4brq-4c2y »
      4byf »

Magnesium in PDB 4byf: Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State

Enzymatic activity of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State

All present enzymatic activity of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State:
3.6.4.1;

Protein crystallography data

The structure of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State, PDB code: 4byf was solved by S.Munnich, M.H.Taft, S.Pathan-Chhatbar, D.J.Manstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.94 / 2.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.580, 158.450, 114.340, 90.00, 91.56, 90.00
R / Rfree (%) 18.3 / 23.67

Other elements in 4byf:

The structure of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State also contains other interesting chemical elements:

Vanadium (V) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State (pdb code 4byf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State, PDB code: 4byf:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4byf

Go back to Magnesium Binding Sites List in 4byf
Magnesium binding site 1 out of 3 in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1000

b:17.9
occ:1.00
H2G1 A:AOV1001 1.4 14.8 1.0
OG1 A:THR112 1.7 22.1 1.0
O2G A:AOV1001 2.0 12.3 1.0
O A:HOH2010 2.1 11.0 1.0
O1B A:AOV1001 2.2 32.7 1.0
OG A:SER161 2.5 22.0 1.0
CB A:THR112 2.7 30.1 1.0
CB A:SER161 3.4 30.7 1.0
PB A:AOV1001 3.5 22.2 1.0
O2A A:AOV1001 3.5 12.9 1.0
CA A:THR112 3.7 32.2 1.0
N A:THR112 3.8 32.9 1.0
CG2 A:THR112 3.8 22.6 1.0
VG A:AOV1001 3.8 16.3 1.0
O3B A:AOV1001 3.9 38.1 1.0
N A:SER161 4.0 40.7 1.0
OD1 A:ASP386 4.0 79.9 1.0
CA A:SER161 4.3 33.1 1.0
PA A:AOV1001 4.3 19.9 1.0
OD2 A:ASP386 4.3 73.0 1.0
O A:HOH2015 4.4 51.1 1.0
O1A A:AOV1001 4.4 27.0 1.0
O3A A:AOV1001 4.4 27.6 1.0
O2B A:AOV1001 4.6 72.2 1.0
CG A:ASP386 4.6 68.3 1.0
O4G A:AOV1001 4.8 35.0 1.0
O1G A:AOV1001 4.8 24.9 1.0
ND2 A:ASN151 4.9 25.8 1.0
C A:LYS111 4.9 33.5 1.0
O A:ASN159 5.0 46.8 1.0
C A:SER160 5.0 40.1 1.0
ND2 A:ASN157 5.0 27.8 1.0
O A:ILE387 5.0 48.5 1.0

Magnesium binding site 2 out of 3 in 4byf

Go back to Magnesium Binding Sites List in 4byf
Magnesium binding site 2 out of 3 in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1000

b:23.6
occ:1.00
O2G C:AOV1001 1.6 40.6 1.0
O C:HOH2021 1.7 23.7 1.0
O C:HOH2019 1.9 16.4 1.0
OG1 C:THR112 2.1 26.5 1.0
O1B C:AOV1001 2.2 21.7 1.0
H2G1 C:AOV1001 2.3 48.7 1.0
OG C:SER161 2.6 33.6 1.0
CB C:THR112 3.2 42.8 1.0
CB C:SER161 3.2 38.5 1.0
VG C:AOV1001 3.3 35.6 1.0
PB C:AOV1001 3.4 27.0 1.0
O3B C:AOV1001 3.5 46.0 1.0
O2A C:AOV1001 3.8 55.5 1.0
N C:SER161 3.9 45.5 1.0
OD1 C:ASP386 3.9 83.8 1.0
O3G C:AOV1001 4.1 48.6 1.0
N C:THR112 4.1 44.9 1.0
O4G C:AOV1001 4.1 56.6 1.0
CA C:THR112 4.2 37.6 1.0
CA C:SER161 4.2 41.5 1.0
CG2 C:THR112 4.2 45.2 1.0
O2B C:AOV1001 4.3 44.8 1.0
OD2 C:ASP386 4.4 79.0 1.0
O C:HOH2020 4.5 36.6 1.0
O C:ILE387 4.5 43.3 1.0
O3A C:AOV1001 4.5 12.4 1.0
CG C:ASP386 4.6 77.2 1.0
PA C:AOV1001 4.7 40.8 1.0
ND2 C:ASN157 5.0 40.6 1.0
C C:SER160 5.0 46.3 1.0

Magnesium binding site 3 out of 3 in 4byf

Go back to Magnesium Binding Sites List in 4byf
Magnesium binding site 3 out of 3 in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1000

b:48.3
occ:1.00
OD1 D:ASP94 2.2 54.3 1.0
O D:TYR100 2.4 33.6 1.0
OD1 D:ASN98 2.4 54.2 1.0
OD2 D:ASP96 2.9 77.5 1.0
CG D:ASP94 3.2 42.6 1.0
O D:HOH2010 3.3 38.0 1.0
CG D:ASP96 3.3 76.3 1.0
CB D:ASP96 3.3 62.4 1.0
C D:TYR100 3.5 31.2 1.0
CG D:ASN98 3.5 55.2 1.0
N D:ASP96 3.6 51.8 1.0
OD2 D:ASP94 3.9 33.7 1.0
CA D:ASP96 4.0 50.1 1.0
N D:TYR100 4.1 35.9 1.0
N D:LYS95 4.1 42.8 1.0
ND2 D:ASN98 4.1 60.4 1.0
CB D:ASP94 4.2 31.2 1.0
CA D:TYR100 4.2 31.6 1.0
N D:GLY97 4.3 36.5 1.0
OD1 D:ASP96 4.3 85.9 1.0
CA D:ASP94 4.3 30.8 1.0
C D:ASP94 4.4 36.7 1.0
N D:ASN98 4.4 33.4 1.0
N D:ILE101 4.6 21.6 1.0
CB D:TYR100 4.6 24.0 1.0
C D:LYS95 4.7 45.8 1.0
C D:ASP96 4.7 43.1 1.0
CB D:ASN98 4.7 43.9 1.0
CA D:ILE101 4.8 30.9 1.0
N D:GLY99 4.8 30.6 1.0
CA D:LYS95 4.9 46.7 1.0
CG1 D:ILE101 5.0 39.5 1.0
CA D:ASN98 5.0 37.4 1.0

Reference:

S.Munnich, M.H.Taft, D.J.Manstein. Crystal Structure of Human Myosin 1C-the Motor in GLUT4 Exocytosis: Implications For Ca(2+) Regulation and 14-3-3 Binding. J.Mol.Biol. V. 426 2070 2014.
ISSN: ISSN 0022-2836
PubMed: 24636949
DOI: 10.1016/J.JMB.2014.03.004
Page generated: Mon Dec 14 09:13:08 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy