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Magnesium in PDB 4byg: Atpase Crystal Structure

Protein crystallography data

The structure of Atpase Crystal Structure, PDB code: 4byg was solved by D.Mattle, N.D.Drachmann, X.Y.Liu, B.P.Pedersen, J.P.Morth, J.Wang, P.Gourdon, P.Nissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.984 / 2.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.120, 72.910, 329.650, 90.00, 90.00, 90.00
R / Rfree (%) 23.21 / 28.73

Other elements in 4byg:

The structure of Atpase Crystal Structure also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom
Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atpase Crystal Structure (pdb code 4byg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Atpase Crystal Structure, PDB code: 4byg:

Magnesium binding site 1 out of 1 in 4byg

Go back to Magnesium Binding Sites List in 4byg
Magnesium binding site 1 out of 1 in the Atpase Crystal Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atpase Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg996

b:68.5
occ:1.00
F2 A:ALF995 1.7 92.4 1.0
O A:HOH2021 2.0 0.4 1.0
OD2 A:ASP426 2.1 78.9 1.0
OD1 A:ASP624 2.1 73.5 1.0
O A:HOH2015 2.2 91.1 1.0
O A:THR428 2.2 52.6 1.0
F3 A:ALF995 2.9 75.3 1.0
CG A:ASP624 3.1 68.1 1.0
AL A:ALF995 3.1 67.3 1.0
CG A:ASP426 3.2 75.0 1.0
C A:THR428 3.3 49.8 1.0
OD2 A:ASP624 3.4 66.2 1.0
OD1 A:ASP426 3.7 91.0 1.0
O A:GLY278 4.0 67.5 1.0
N A:GLY625 4.1 52.4 1.0
CA A:THR428 4.1 51.9 1.0
OD2 A:ASP628 4.1 51.1 1.0
CB A:THR428 4.2 55.7 1.0
F4 A:ALF995 4.2 35.1 1.0
O A:HOH2014 4.2 63.3 1.0
N A:GLY429 4.3 50.3 1.0
N A:THR428 4.4 57.1 1.0
CB A:ASP624 4.4 62.0 1.0
CA A:GLY625 4.5 61.2 1.0
CB A:ASP426 4.5 58.5 1.0
N A:ASP624 4.5 56.6 1.0
C A:ASP624 4.5 51.3 1.0
CA A:GLY429 4.5 58.4 1.0
CA A:ASP624 4.7 58.0 1.0
F1 A:ALF995 4.8 44.5 1.0
CA A:GLY278 4.8 78.1 1.0
C A:GLY278 4.8 77.0 1.0

Reference:

D.Mattle, N.D.Drachmann, X.Y.Liu, B.P.Pedersen, J.P.Morth, J.Wang, P.Gourdon, P.Nissen. Dephosphorylation of Pib-Type Cu(I)-Atpases As Studied By Metallofluoride Complexes To Be Published.
Page generated: Mon Dec 14 09:13:08 2020

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