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Magnesium in PDB 4bzi: The Structure of the Copii Coat Assembled on Membranes

Other elements in 4bzi:

The structure of The Structure of the Copii Coat Assembled on Membranes also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of the Copii Coat Assembled on Membranes (pdb code 4bzi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Structure of the Copii Coat Assembled on Membranes, PDB code: 4bzi:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4bzi

Go back to Magnesium Binding Sites List in 4bzi
Magnesium binding site 1 out of 3 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1191

b:28.9
occ:1.00
O2B B:GNP1190 1.9 28.4 1.0
O1G B:GNP1190 2.0 33.1 1.0
OG1 B:THR54 2.2 17.8 1.0
OG1 B:THR37 2.3 22.4 1.0
PG B:GNP1190 2.9 30.2 1.0
PB B:GNP1190 2.9 28.5 1.0
N3B B:GNP1190 3.0 27.4 1.0
CB B:THR54 3.4 20.9 1.0
CB B:THR37 3.4 26.2 1.0
N B:THR54 3.6 23.1 1.0
O3G B:GNP1190 3.7 27.8 1.0
O1B B:GNP1190 4.0 27.3 1.0
O3A B:GNP1190 4.0 26.2 1.0
O2A B:GNP1190 4.1 26.1 1.0
CA B:THR54 4.1 19.9 1.0
O2G B:GNP1190 4.1 30.6 1.0
N B:THR37 4.1 27.5 1.0
NH1 A:ARG722 4.2 26.6 1.0
CA B:THR37 4.4 27.2 1.0
OD2 B:ASP73 4.4 44.8 1.0
PA B:GNP1190 4.4 25.8 1.0
OD1 B:ASP73 4.4 48.0 1.0
CG2 B:THR37 4.5 23.1 1.0
O B:LEU74 4.6 30.5 1.0
CG2 B:THR54 4.6 20.4 1.0
O1A B:GNP1190 4.6 25.2 1.0
OD1 A:ASN600 4.6 28.8 1.0
O B:GLN52 4.6 30.7 1.0
C B:PRO53 4.6 24.6 1.0
CE B:LYS36 4.7 27.8 1.0
CA B:PRO53 4.7 26.7 1.0
CG B:ASP73 4.8 44.7 1.0
NZ B:LYS36 4.9 22.4 1.0
CB B:LYS36 4.9 28.1 1.0

Magnesium binding site 2 out of 3 in 4bzi

Go back to Magnesium Binding Sites List in 4bzi
Magnesium binding site 2 out of 3 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1191

b:28.9
occ:1.00
O2B J:GNP1190 1.9 28.4 1.0
O1G J:GNP1190 2.0 33.1 1.0
OG1 J:THR54 2.2 17.8 1.0
OG1 J:THR37 2.3 22.4 1.0
PG J:GNP1190 2.9 30.2 1.0
PB J:GNP1190 2.9 28.5 1.0
N3B J:GNP1190 3.0 27.4 1.0
CB J:THR54 3.4 20.9 1.0
CB J:THR37 3.4 26.2 1.0
N J:THR54 3.6 23.1 1.0
O3G J:GNP1190 3.7 27.8 1.0
O1B J:GNP1190 4.0 27.3 1.0
O3A J:GNP1190 4.0 26.2 1.0
O2A J:GNP1190 4.1 26.1 1.0
CA J:THR54 4.1 19.9 1.0
O2G J:GNP1190 4.1 30.6 1.0
N J:THR37 4.1 27.5 1.0
NH1 D:ARG722 4.2 26.6 1.0
CA J:THR37 4.4 27.2 1.0
OD2 J:ASP73 4.4 44.8 1.0
PA J:GNP1190 4.4 25.8 1.0
OD1 J:ASP73 4.4 48.0 1.0
CG2 J:THR37 4.5 23.1 1.0
O J:LEU74 4.6 30.5 1.0
CG2 J:THR54 4.6 20.4 1.0
O1A J:GNP1190 4.6 25.2 1.0
OD1 D:ASN600 4.6 28.8 1.0
O J:GLN52 4.6 30.7 1.0
C J:PRO53 4.6 24.6 1.0
CE J:LYS36 4.7 27.8 1.0
CA J:PRO53 4.7 26.7 1.0
CG J:ASP73 4.8 44.7 1.0
NZ J:LYS36 4.9 22.4 1.0
CB J:LYS36 4.9 28.1 1.0

Magnesium binding site 3 out of 3 in 4bzi

Go back to Magnesium Binding Sites List in 4bzi
Magnesium binding site 3 out of 3 in the The Structure of the Copii Coat Assembled on Membranes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of the Copii Coat Assembled on Membranes within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg1191

b:28.9
occ:1.00
O2B K:GNP1190 1.9 28.4 1.0
O1G K:GNP1190 2.0 33.1 1.0
OG1 K:THR54 2.2 17.8 1.0
OG1 K:THR37 2.3 22.4 1.0
PG K:GNP1190 2.9 30.2 1.0
PB K:GNP1190 2.9 28.5 1.0
N3B K:GNP1190 3.0 27.4 1.0
CB K:THR54 3.4 20.9 1.0
CB K:THR37 3.4 26.2 1.0
N K:THR54 3.6 23.1 1.0
O3G K:GNP1190 3.7 27.8 1.0
O1B K:GNP1190 4.0 27.3 1.0
O3A K:GNP1190 4.0 26.2 1.0
O2A K:GNP1190 4.1 26.1 1.0
CA K:THR54 4.1 19.9 1.0
O2G K:GNP1190 4.1 30.6 1.0
N K:THR37 4.1 27.5 1.0
NH1 G:ARG722 4.2 26.6 1.0
CA K:THR37 4.4 27.2 1.0
OD2 K:ASP73 4.4 44.8 1.0
PA K:GNP1190 4.4 25.8 1.0
OD1 K:ASP73 4.4 48.0 1.0
CG2 K:THR37 4.5 23.1 1.0
O K:LEU74 4.6 30.5 1.0
CG2 K:THR54 4.6 20.4 1.0
O1A K:GNP1190 4.6 25.2 1.0
OD1 G:ASN600 4.6 28.8 1.0
O K:GLN52 4.6 30.7 1.0
C K:PRO53 4.6 24.6 1.0
CE K:LYS36 4.7 27.8 1.0
CA K:PRO53 4.7 26.7 1.0
CG K:ASP73 4.8 44.7 1.0
NZ K:LYS36 4.9 22.4 1.0
CB K:LYS36 4.9 28.1 1.0

Reference:

G.Zanetti, S.Prinz, S.Daum, A.Meister, R.Schekman, K.Bacia, J.A.G.Briggs. The Structure of the Copii Transport-Vesicle Coat Assembled on Membranes Elife V. 2 00951 2013.
ISSN: ISSN 1521-6543
PubMed: 24062940
DOI: 10.7554/ELIFE.00951
Page generated: Mon Dec 14 09:13:16 2020

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