Magnesium in PDB 4c2t: Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna

All present enzymatic activity of Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna:
3.6.4.12;

The structure of Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna, PDB code: 4c2t was solved by M.Stelter, S.Acajjaoui, S.Mcsweeney, J.Timmins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.147 / 4.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	71.457, 390.044, 71.559, 90.00, 106.13, 90.00
R / Rfree (%)	24.64 / 27.13

The binding sites of Magnesium atom in the Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna (pdb code 4c2t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna, PDB code: 4c2t:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1663 b:97.3 occ:1.00 O1B A:ANP1664 2.1 1.0 1.0 OG1 A:THR39 2.2 0.9 1.0 O1G A:ANP1664 2.3 1.0 1.0 OE2 A:GLU228 3.0 0.3 1.0 O2G A:ANP1664 3.1 1.0 1.0 PG A:ANP1664 3.2 1.0 1.0 PB A:ANP1664 3.5 1.0 1.0 CB A:THR39 3.6 0.7 1.0 OD1 A:ASP227 3.7 0.6 1.0 OD2 A:ASP227 3.8 0.5 1.0 CD A:GLU228 4.0 0.0 1.0 N3B A:ANP1664 4.0 1.0 1.0 O3A A:ANP1664 4.1 1.0 1.0 CG A:ASP227 4.2 0.9 1.0 N A:THR39 4.3 0.4 1.0 CA A:GLY575 4.4 0.7 1.0 CG2 A:THR39 4.4 0.9 1.0 CA A:THR39 4.5 0.5 1.0 O3G A:ANP1664 4.5 1.0 1.0 OE1 A:GLU228 4.5 0.1 1.0 CE A:LYS38 4.6 0.8 1.0 NZ A:LYS38 4.6 0.4 1.0 O2B A:ANP1664 4.7 1.0 1.0 O2A A:ANP1664 4.7 1.0 1.0 O A:GLY575 4.9 0.8 1.0 PA A:ANP1664 4.9 1.0 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1663 b:92.5 occ:1.00 O1B B:ANP1664 2.1 1.0 1.0 OG1 B:THR39 2.1 0.8 1.0 O1G B:ANP1664 2.2 1.0 1.0 PB B:ANP1664 3.2 1.0 1.0 PG B:ANP1664 3.4 1.0 1.0 N3B B:ANP1664 3.5 1.0 1.0 CB B:THR39 3.5 0.5 1.0 OD2 B:ASP227 3.6 0.6 1.0 OE2 B:GLU228 3.6 0.9 1.0 O2B B:ANP1664 4.0 1.0 1.0 OD1 B:ASP227 4.1 0.6 1.0 N B:THR39 4.2 0.6 1.0 CG B:ASP227 4.3 0.2 1.0 O1A B:ANP1664 4.3 1.0 1.0 O3G B:ANP1664 4.3 1.0 1.0 CG2 B:THR39 4.3 0.4 1.0 CA B:THR39 4.4 0.8 1.0 O2G B:ANP1664 4.4 1.0 1.0 O3A B:ANP1664 4.5 1.0 1.0 CA B:GLY575 4.5 0.6 1.0 CD B:GLU228 4.6 0.3 1.0 O2A B:ANP1664 4.7 1.0 1.0 NZ B:LYS38 4.7 0.5 1.0 PA B:ANP1664 4.7 1.0 1.0 O B:GLY575 4.8 0.9 1.0 CE B:LYS38 4.9 0.1 1.0 CB B:LYS38 5.0 0.9 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1663 b:0.3 occ:1.00 OG1 C:THR39 2.1 0.0 1.0 O1G C:ANP1664 2.3 0.7 1.0 OE2 C:GLU228 3.1 0.8 1.0 O1B C:ANP1664 3.2 0.7 1.0 OD2 C:ASP227 3.2 0.5 1.0 OD1 C:ASP227 3.4 0.8 1.0 CB C:THR39 3.6 0.7 1.0 PG C:ANP1664 3.6 0.7 1.0 CG C:ASP227 3.7 0.4 1.0 O2G C:ANP1664 3.9 0.7 1.0 N C:THR39 4.2 0.2 1.0 CD C:GLU228 4.2 0.2 1.0 CG2 C:THR39 4.2 0.5 1.0 CA C:THR39 4.3 0.6 1.0 PB C:ANP1664 4.5 0.7 1.0 O3G C:ANP1664 4.6 0.7 1.0 CA C:GLY575 4.7 0.2 1.0 CG C:GLU228 4.7 0.1 1.0 N3B C:ANP1664 4.7 0.7 1.0 CE C:LYS38 4.8 0.1 1.0 NZ C:LYS38 5.0 0.3 1.0 CB C:LYS38 5.0 0.3 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Full Length Deinococcus Radiodurans Uvrd in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1662 b:0.3 occ:1.00 OG1 D:THR39 2.1 0.3 1.0 O1G D:ANP1663 2.1 0.4 1.0 O1B D:ANP1663 2.4 0.4 1.0 OE2 D:GLU228 3.1 0.4 1.0 CB D:THR39 3.5 0.5 1.0 OD2 D:ASP227 3.5 0.9 1.0 PG D:ANP1663 3.5 0.4 1.0 OD1 D:ASP227 3.5 0.3 1.0 N D:THR39 3.7 0.8 1.0 PB D:ANP1663 3.7 0.4 1.0 CG D:ASP227 3.9 0.3 1.0 CA D:THR39 4.0 1.0 1.0 O2G D:ANP1663 4.0 0.4 1.0 N3B D:ANP1663 4.0 0.4 1.0 CB D:LYS38 4.2 0.1 1.0 CE D:LYS38 4.3 0.2 1.0 CD D:GLU228 4.3 0.5 1.0 NZ D:LYS38 4.3 0.6 1.0 CG2 D:THR39 4.3 0.6 1.0 O2B D:ANP1663 4.4 0.4 1.0 C D:LYS38 4.6 0.0 1.0 O3G D:ANP1663 4.6 0.4 1.0 O1A D:ANP1663 4.7 0.4 1.0 O3A D:ANP1663 4.9 0.4 1.0 CA D:LYS38 4.9 1.0 1.0 O2A D:ANP1663 4.9 0.4 1.0

M.Stelter, S.Acajjaoui, S.Mcsweeney, J.Timmins. Structural and Mechanistic Insight Into Dna Unwinding By Deinococcus Radiodurans Uvrd. Plos One V. 8 77364 2013.
ISSN: ISSN 1932-6203
PubMed: 24143224
DOI: 10.1371/JOURNAL.PONE.0077364