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Magnesium in PDB 4ckm: Structure of the N-Terminal Domain of Leishmania Sas-6

Protein crystallography data

The structure of Structure of the N-Terminal Domain of Leishmania Sas-6, PDB code: 4ckm was solved by M.Van Breugel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 79.49 / 2.15
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.250, 84.250, 239.940, 90.00, 90.00, 90.00
R / Rfree (%) 20.839 / 24.534

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the N-Terminal Domain of Leishmania Sas-6 (pdb code 4ckm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the N-Terminal Domain of Leishmania Sas-6, PDB code: 4ckm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4ckm

Go back to Magnesium Binding Sites List in 4ckm
Magnesium binding site 1 out of 2 in the Structure of the N-Terminal Domain of Leishmania Sas-6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the N-Terminal Domain of Leishmania Sas-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1272

b:46.5
occ:1.00
O B:HOH2046 2.2 41.2 1.0
O C:HOH2028 2.2 43.6 1.0
O C:HOH2026 2.2 45.8 1.0
O B:HOH2041 2.2 45.8 1.0
O B:HOH2061 2.2 47.7 1.0
O B:HOH2045 2.2 42.3 1.0
OE2 C:GLU253 4.0 46.2 1.0
OE1 C:GLU253 4.1 39.9 1.0
OE2 B:GLU253 4.2 47.2 1.0
OH C:TYR230 4.2 41.5 1.0
OE1 B:GLU253 4.3 40.3 1.0
OH B:TYR230 4.4 28.1 1.0
CD C:GLU253 4.5 39.6 1.0
CD B:GLU253 4.6 39.3 1.0

Magnesium binding site 2 out of 2 in 4ckm

Go back to Magnesium Binding Sites List in 4ckm
Magnesium binding site 2 out of 2 in the Structure of the N-Terminal Domain of Leishmania Sas-6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the N-Terminal Domain of Leishmania Sas-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1273

b:55.8
occ:1.00
O B:HOH2058 2.2 48.5 1.0
O B:HOH2017 2.2 59.7 1.0
O B:HOH2062 2.2 55.7 1.0
O B:HOH2063 2.2 56.5 1.0
O B:HOH2014 2.2 59.2 1.0
O B:HOH2015 2.2 58.0 1.0
OE1 B:GLU188 4.0 38.2 1.0
OE1 B:GLN270 4.0 47.0 1.0
OE2 B:GLU190 4.5 61.4 1.0
CD B:GLN270 4.8 46.3 1.0
OE1 B:GLU190 4.9 54.8 1.0

Reference:

M.Van Breugel, R.Wilcken, S.H.Mclaughlin, T.J.Rutherford, C.M.Johnson. Structure of the Sas-6 Cartwheel Hub From Leishmania Major Elife V. 3 01812 2014.
ISSN: ISSN 2050-084X
PubMed: 24596152
DOI: 10.7554/ELIFE.01812
Page generated: Mon Dec 14 11:41:17 2020

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