Atomistry » Magnesium » PDB 4cs4-4d4g » 4cw7
Atomistry »
  Magnesium »
    PDB 4cs4-4d4g »
      4cw7 »

Magnesium in PDB 4cw7: Structure of the FAP7-RPS14 Complex in Complex with Atp

Enzymatic activity of Structure of the FAP7-RPS14 Complex in Complex with Atp

All present enzymatic activity of Structure of the FAP7-RPS14 Complex in Complex with Atp:
2.7.4.3;

Protein crystallography data

The structure of Structure of the FAP7-RPS14 Complex in Complex with Atp, PDB code: 4cw7 was solved by J.Loch, M.Blaud, S.Rety, S.Lebaron, P.Deschamps, J.Bareille, J.Jombart, J.Robert-Paganin, L.Delbos, F.Chardon, E.Zhang, C.Charenton, D.Tollervey, N.Leulliot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.448 / 2.46
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 125.046, 143.079, 83.786, 90.00, 90.00, 90.00
R / Rfree (%) 18.92 / 22.94

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the FAP7-RPS14 Complex in Complex with Atp (pdb code 4cw7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of the FAP7-RPS14 Complex in Complex with Atp, PDB code: 4cw7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 1 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:33.1
occ:1.00
 O3G A:ATP1001 1.9 38.5 1.0
OG1 A:THR14 2.0 41.5 1.0
O A:HOH2003 2.1 26.5 1.0
O2B A:ATP1001 2.2 37.7 1.0
O A:HOH2005 2.3 33.1 1.0
O A:HOH2004 2.3 29.9 1.0
CB A:THR14 3.0 43.4 1.0
PG A:ATP1001 3.2 58.9 0.4
PB A:ATP1001 3.3 33.3 1.0
O3B A:ATP1001 3.4 49.9 1.0
O2A A:ATP1001 3.9 32.7 1.0
N A:THR14 3.9 38.3 1.0
CA A:THR14 4.0 41.0 1.0
O2G A:ATP1001 4.0 71.7 1.0
CG2 A:THR14 4.1 44.4 1.0
O A:HOH2010 4.1 40.6 1.0
O A:HOH2009 4.2 38.9 1.0
O1G A:ATP1001 4.2 67.3 1.0
OD2 A:ASP71 4.2 48.2 1.0
O3A A:ATP1001 4.3 48.7 1.0
PA A:ATP1001 4.4 33.2 1.0
O1B A:ATP1001 4.4 43.7 1.0
O E:HOH2016 4.4 34.5 1.0
O1A A:ATP1001 4.5 32.5 1.0
OD1 A:ASP71 4.5 49.5 1.0
O A:HOH2012 4.8 38.8 1.0
CG A:ASP71 4.9 38.0 1.0
CB A:LYS13 4.9 32.6 1.0

Magnesium binding site 2 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 2 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:84.3
occ:1.00
 O A:HOH2029 2.1 57.1 1.0
OE2 A:GLU166 2.1 71.1 1.0
O A:HOH2026 2.2 54.5 1.0
O A:HOH2030 2.3 48.8 1.0
CD A:GLU166 3.3 71.8 1.0
OD2 A:ASP163 3.5 51.7 1.0
OE1 B:GLU54 3.5 57.3 1.0
OD1 B:ASP51 3.7 82.6 1.0
OE2 B:GLU54 3.9 47.2 1.0
CB A:ASP163 3.9 34.0 1.0
OE1 A:GLU166 4.2 80.5 1.0
CD B:GLU54 4.2 48.3 1.0
CG A:ASP163 4.2 45.5 1.0
CG A:GLU166 4.2 57.0 1.0
CG B:ASP51 4.5 73.3 1.0
O B:HOH2003 4.7 39.9 1.0

Magnesium binding site 3 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 3 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1002

b:70.5
occ:1.00
 O C:HOH2003 1.9 44.2 1.0
O C:HOH2002 2.1 54.8 1.0
O1B C:ADP1001 2.5 74.5 1.0
OG1 C:THR14 2.6 61.4 1.0
O2B C:ADP1001 3.3 70.4 1.0
PB C:ADP1001 3.5 70.4 1.0
CB C:THR14 3.7 68.3 1.0
O1A C:ADP1001 4.0 72.3 1.0
NH2 C:ARG100 4.2 74.9 1.0
O C:HOH2006 4.5 42.5 1.0
O3A C:ADP1001 4.5 0.7 1.0
N C:THR14 4.5 70.0 1.0
O3B C:ADP1001 4.6 61.0 1.0
OD2 C:ASP71 4.6 74.5 1.0
OD1 C:ASP71 4.7 61.9 1.0
PA C:ADP1001 4.7 70.0 1.0
CA C:THR14 4.7 69.9 1.0
CG2 C:THR14 4.7 67.9 1.0
CE C:LYS13 4.9 57.6 1.0
O C:HOH2001 5.0 42.5 1.0
NZ C:LYS13 5.0 60.5 1.0

Magnesium binding site 4 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 4 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1003

b:73.6
occ:1.00
 OE1 D:GLU54 2.4 83.1 1.0
OE2 C:GLU166 2.8 69.7 1.0
OD2 D:ASP51 2.9 92.7 1.0
OD2 C:ASP163 3.0 48.5 1.0
O C:HOH2008 3.2 68.7 1.0
CD D:GLU54 3.3 76.4 1.0
OE2 D:GLU54 3.4 76.6 1.0
O C:HOH2009 3.6 53.5 1.0
CB C:ASP163 3.7 44.8 1.0
CG C:ASP163 3.8 48.6 1.0
CD C:GLU166 3.9 68.9 1.0
CG D:ASP51 4.0 86.1 1.0
OD1 D:ASP51 4.5 92.0 1.0
CG C:GLU166 4.5 51.3 1.0
ND2 D:ASN25 4.6 36.8 1.0
CG D:GLU54 4.7 65.8 1.0
OE1 C:GLU166 4.9 78.9 1.0

Magnesium binding site 5 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 5 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1002

b:33.2
occ:1.00
 O1G E:ATP1001 1.9 29.9 1.0
OG1 E:THR14 2.0 31.1 1.0
O E:HOH2004 2.0 30.4 1.0
O E:HOH2005 2.1 26.9 1.0
O2B E:ATP1001 2.1 37.9 1.0
O E:HOH2006 2.3 29.7 1.0
CB E:THR14 3.0 36.2 1.0
PG E:ATP1001 3.2 43.0 0.6
PB E:ATP1001 3.3 25.6 1.0
O3B E:ATP1001 3.4 47.6 1.0
N E:THR14 3.7 32.0 1.0
CA E:THR14 3.9 35.2 1.0
OD2 E:ASP71 4.0 37.4 1.0
O2A E:ATP1001 4.1 27.8 1.0
O3G E:ATP1001 4.1 47.8 1.0
OD1 E:ASP71 4.1 25.3 1.0
CG2 E:THR14 4.1 30.5 1.0
O2G E:ATP1001 4.3 47.1 1.0
O1B E:ATP1001 4.3 41.9 1.0
O3A E:ATP1001 4.4 31.0 1.0
O E:HOH2009 4.5 23.6 1.0
PA E:ATP1001 4.5 32.2 1.0
CG E:ASP71 4.5 34.3 1.0
O1A E:ATP1001 4.5 30.3 1.0
CB E:LYS13 4.6 24.2 1.0
C E:LYS13 4.7 40.7 1.0
CE E:LYS13 4.9 19.6 1.0

Magnesium binding site 6 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 6 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1003

b:79.8
occ:1.00
 O E:HOH2035 2.3 41.3 1.0
OE2 E:GLU166 2.4 63.4 1.0
O E:HOH2031 2.8 57.3 1.0
O E:HOH2032 2.9 50.9 1.0
OE1 F:GLU54 3.3 80.8 1.0
OD1 F:ASP51 3.5 86.1 1.0
CD E:GLU166 3.6 57.6 1.0
OE2 F:GLU54 3.6 69.1 1.0
OD2 E:ASP163 3.7 34.0 1.0
CD F:GLU54 3.9 66.3 1.0
CG E:GLU166 4.2 47.9 1.0
CB E:ASP163 4.3 25.6 1.0
CG E:ASP163 4.4 33.0 1.0
CG F:ASP51 4.5 77.5 1.0
OE1 E:GLU166 4.5 62.6 1.0
OD2 F:ASP51 4.6 94.1 1.0

Magnesium binding site 7 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 7 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg1002

b:56.3
occ:1.00
 O G:HOH2003 1.9 42.7 1.0
O3B G:ADP1001 2.1 49.7 1.0
O G:HOH2004 2.3 38.5 1.0
O G:HOH2011 2.3 25.3 1.0
OG1 G:THR14 2.5 50.2 1.0
PB G:ADP1001 3.0 48.9 1.0
O1B G:ADP1001 3.0 36.2 1.0
CB G:THR14 3.6 51.3 1.0
N G:THR14 3.9 52.9 1.0
O2B G:ADP1001 3.9 63.9 1.0
OD1 G:ASP71 4.1 59.5 1.0
O G:HOH2007 4.1 43.0 1.0
O G:HOH2002 4.2 33.0 1.0
CE G:LYS13 4.2 52.3 1.0
O1A G:ADP1001 4.2 27.9 1.0
O3A G:ADP1001 4.2 65.0 1.0
OD2 G:ASP71 4.3 57.3 1.0
CA G:THR14 4.3 50.6 1.0
CB G:LYS13 4.3 49.0 1.0
NZ G:LYS13 4.3 43.7 1.0
PA G:ADP1001 4.6 43.4 1.0
CG G:ASP71 4.6 54.7 1.0
NH2 G:ARG100 4.7 55.1 1.0
O2A G:ADP1001 4.8 47.0 1.0
C G:LYS13 4.8 54.0 1.0
CG2 G:THR14 4.8 42.2 1.0
CA G:LYS13 4.9 52.2 1.0

Magnesium binding site 8 out of 8 in 4cw7

Go back to Magnesium Binding Sites List in 4cw7
Magnesium binding site 8 out of 8 in the Structure of the FAP7-RPS14 Complex in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of the FAP7-RPS14 Complex in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg1003

b:64.8
occ:1.00
 O G:HOH2018 2.1 71.5 1.0
OE2 G:GLU166 2.6 64.9 1.0
O G:HOH2020 2.7 70.3 1.0
OE1 H:GLU54 3.3 65.9 1.0
OD2 G:ASP163 3.6 58.8 1.0
OD1 H:ASP51 3.6 88.2 1.0
CD G:GLU166 3.7 57.1 1.0
OE2 H:GLU54 3.8 59.5 1.0
CD H:GLU54 3.9 58.0 1.0
CB G:ASP163 4.1 48.2 1.0
CG G:ASP163 4.3 51.3 1.0
CG H:ASP51 4.4 82.1 1.0
OE1 G:GLU166 4.5 70.5 1.0
CG G:GLU166 4.6 42.3 1.0
O H:HOH2003 4.6 58.5 1.0
O G:HOH2019 4.8 52.7 1.0
OD2 H:ASP51 4.8 87.6 1.0

Reference:

J.Loch, M.Blaud, S.Rety, S.Lebaron, P.Deschamps, J.Bareille, J.Jombart, J.Robert-Paganin, L.Delbos, F.Chardon, E.Zhang, C.Charenton, D.Tollervey, N.Leulliot. Rna Mimicry By the FAP7 Adenylate Kinase in Ribosome Biogenesis Plos Biol. V. 12 01860 2014.
ISSN: ISSN 1544-9173
PubMed: 24823650
DOI: 10.1371/JOURNAL.PBIO.1001860
Page generated: Thu Aug 15 16:54:02 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy