Magnesium in PDB 4cyi: Chaetomium Thermophilum PAN3
Protein crystallography data
The structure of Chaetomium Thermophilum PAN3, PDB code: 4cyi
was solved by
J.Wolf,
E.Valkov,
M.D.Allen,
B.Meineke,
Y.Gordiyenko,
S.H.Mclaughlin,
T.M.Olsen,
C.V.Robinson,
M.Bycroft,
M.Stewart,
L.A.Passmore,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
52.212 /
2.42
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.520,
146.040,
149.930,
89.81,
81.13,
82.77
|
|
R / Rfree (%)
|
19.03 /
23.43
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Chaetomium Thermophilum PAN3
(pdb code 4cyi). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Chaetomium Thermophilum PAN3, PDB code: 4cyi:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 1 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1000
b:41.0
occ:1.00
|
OD2
|
A:ASP257
|
1.9
|
67.6
|
1.0
|
|
O3A
|
A:ATP900
|
2.3
|
76.9
|
1.0
|
|
O
|
A:HOH2030
|
2.3
|
70.7
|
1.0
|
|
O3B
|
A:ATP900
|
2.8
|
0.1
|
1.0
|
|
O3G
|
A:ATP900
|
2.9
|
64.5
|
1.0
|
|
O
|
A:SER271
|
2.9
|
34.9
|
1.0
|
|
O1A
|
A:ATP900
|
3.0
|
55.4
|
1.0
|
|
PB
|
A:ATP900
|
3.2
|
38.9
|
1.0
|
|
CG
|
A:ASP257
|
3.2
|
53.0
|
1.0
|
|
PA
|
A:ATP900
|
3.3
|
40.8
|
1.0
|
|
PG
|
A:ATP900
|
3.4
|
47.7
|
1.0
|
|
HG
|
A:SER271
|
3.5
|
82.7
|
1.0
|
|
H5'1
|
A:ATP900
|
3.7
|
26.8
|
1.0
|
|
O2B
|
A:ATP900
|
3.8
|
59.8
|
1.0
|
|
HB3
|
A:ASP257
|
3.9
|
66.9
|
1.0
|
|
H5'2
|
A:ATP900
|
3.9
|
26.8
|
1.0
|
|
O1G
|
A:ATP900
|
4.0
|
73.6
|
1.0
|
|
OD1
|
A:ASP257
|
4.0
|
55.3
|
1.0
|
|
HA
|
A:TRP272
|
4.0
|
45.2
|
1.0
|
|
C5'
|
A:ATP900
|
4.1
|
22.3
|
1.0
|
|
CB
|
A:ASP257
|
4.1
|
55.8
|
1.0
|
|
C
|
A:SER271
|
4.1
|
50.0
|
1.0
|
|
O5'
|
A:ATP900
|
4.2
|
45.8
|
1.0
|
|
OG
|
A:SER271
|
4.2
|
69.0
|
1.0
|
|
O
|
A:HOH2032
|
4.4
|
49.0
|
1.0
|
|
O1B
|
A:ATP900
|
4.4
|
69.2
|
1.0
|
|
HA
|
A:ASP257
|
4.5
|
70.1
|
1.0
|
|
O2A
|
A:ATP900
|
4.5
|
49.6
|
1.0
|
|
HG21
|
A:VAL273
|
4.6
|
49.5
|
1.0
|
|
O2G
|
A:ATP900
|
4.7
|
62.7
|
1.0
|
|
H
|
A:SER271
|
4.8
|
53.2
|
1.0
|
|
HE3
|
A:TRP272
|
4.8
|
58.6
|
1.0
|
|
CA
|
A:TRP272
|
4.8
|
37.7
|
1.0
|
|
HB2
|
A:ASP257
|
4.9
|
66.9
|
1.0
|
|
CA
|
A:ASP257
|
4.9
|
58.4
|
1.0
|
|
N
|
A:TRP272
|
4.9
|
49.5
|
1.0
|
|
H
|
A:VAL273
|
5.0
|
47.2
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 2 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1000
b:38.5
occ:1.00
|
O2B
|
B:ATP900
|
2.1
|
35.5
|
1.0
|
|
OD1
|
B:ASP257
|
2.2
|
50.2
|
1.0
|
|
O3G
|
B:ATP900
|
2.2
|
64.5
|
1.0
|
|
O1A
|
B:ATP900
|
2.2
|
49.8
|
1.0
|
|
O
|
B:SER271
|
3.0
|
81.5
|
1.0
|
|
CG
|
B:ASP257
|
3.3
|
71.3
|
1.0
|
|
PB
|
B:ATP900
|
3.3
|
47.1
|
1.0
|
|
PG
|
B:ATP900
|
3.4
|
65.1
|
1.0
|
|
HG
|
B:SER271
|
3.5
|
96.1
|
1.0
|
|
PA
|
B:ATP900
|
3.5
|
43.0
|
1.0
|
|
HH21
|
B:ARG288
|
3.6
|
79.5
|
1.0
|
|
HH22
|
B:ARG288
|
3.7
|
79.5
|
1.0
|
|
O3B
|
B:ATP900
|
3.8
|
55.0
|
1.0
|
|
O3A
|
B:ATP900
|
3.9
|
48.6
|
1.0
|
|
HA
|
B:TRP272
|
3.9
|
60.8
|
1.0
|
|
H5'2
|
B:ATP900
|
3.9
|
48.3
|
1.0
|
|
O2G
|
B:ATP900
|
4.0
|
76.8
|
1.0
|
|
NH2
|
B:ARG288
|
4.0
|
66.3
|
1.0
|
|
OD2
|
B:ASP257
|
4.1
|
62.6
|
1.0
|
|
H5'1
|
B:ATP900
|
4.1
|
48.3
|
1.0
|
|
HB3
|
B:ASP257
|
4.1
|
61.5
|
1.0
|
|
C
|
B:SER271
|
4.2
|
79.7
|
1.0
|
|
HG21
|
B:VAL273
|
4.2
|
65.0
|
1.0
|
|
OG
|
B:SER271
|
4.3
|
80.1
|
1.0
|
|
CB
|
B:ASP257
|
4.3
|
51.3
|
1.0
|
|
C5'
|
B:ATP900
|
4.4
|
40.2
|
1.0
|
|
O
|
B:SER259
|
4.4
|
0.0
|
1.0
|
|
O5'
|
B:ATP900
|
4.5
|
50.5
|
1.0
|
|
O2A
|
B:ATP900
|
4.6
|
52.1
|
1.0
|
|
HA
|
B:ASP257
|
4.6
|
79.1
|
1.0
|
|
O1G
|
B:ATP900
|
4.7
|
60.0
|
1.0
|
|
O1B
|
B:ATP900
|
4.7
|
37.3
|
1.0
|
|
CA
|
B:TRP272
|
4.8
|
50.6
|
1.0
|
|
H
|
B:VAL273
|
4.8
|
77.9
|
1.0
|
|
N
|
B:TRP272
|
4.9
|
66.8
|
1.0
|
|
H
|
B:SER271
|
5.0
|
79.7
|
1.0
|
|
HZ2
|
B:LYS398
|
5.0
|
46.7
|
1.0
|
|
HD1
|
B:TRP272
|
5.0
|
98.4
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 3 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1000
b:56.9
occ:1.00
|
OD2
|
C:ASP257
|
2.0
|
91.0
|
1.0
|
|
O3B
|
C:ATP900
|
2.4
|
0.9
|
1.0
|
|
O
|
C:SER271
|
2.5
|
60.7
|
1.0
|
|
O1A
|
C:ATP900
|
2.9
|
71.2
|
1.0
|
|
O2G
|
C:ATP900
|
3.2
|
96.6
|
1.0
|
|
HG
|
C:SER271
|
3.2
|
93.4
|
1.0
|
|
CG
|
C:ASP257
|
3.3
|
78.1
|
1.0
|
|
O3A
|
C:ATP900
|
3.3
|
68.1
|
1.0
|
|
PG
|
C:ATP900
|
3.3
|
65.9
|
1.0
|
|
PB
|
C:ATP900
|
3.5
|
56.4
|
1.0
|
|
O3G
|
C:ATP900
|
3.6
|
51.2
|
1.0
|
|
HA
|
C:TRP272
|
3.7
|
69.3
|
1.0
|
|
PA
|
C:ATP900
|
3.7
|
54.6
|
1.0
|
|
C
|
C:SER271
|
3.7
|
70.8
|
1.0
|
|
OG
|
C:SER271
|
3.9
|
77.8
|
1.0
|
|
HB3
|
C:ASP257
|
4.0
|
90.1
|
1.0
|
|
OD1
|
C:ASP257
|
4.0
|
75.8
|
1.0
|
|
O
|
C:HOH2029
|
4.1
|
55.8
|
1.0
|
|
O
|
C:HOH2028
|
4.1
|
67.6
|
1.0
|
|
H5'1
|
C:ATP900
|
4.2
|
50.7
|
1.0
|
|
CB
|
C:ASP257
|
4.3
|
75.1
|
1.0
|
|
H5'2
|
C:ATP900
|
4.4
|
50.7
|
1.0
|
|
H
|
C:SER271
|
4.4
|
79.5
|
1.0
|
|
O2B
|
C:ATP900
|
4.5
|
43.4
|
1.0
|
|
O1B
|
C:ATP900
|
4.5
|
0.4
|
1.0
|
|
HG21
|
C:VAL273
|
4.5
|
65.9
|
1.0
|
|
CA
|
C:TRP272
|
4.5
|
57.8
|
1.0
|
|
HE3
|
C:TRP272
|
4.6
|
73.1
|
1.0
|
|
N
|
C:TRP272
|
4.6
|
59.7
|
1.0
|
|
O1G
|
C:ATP900
|
4.6
|
53.4
|
1.0
|
|
C5'
|
C:ATP900
|
4.7
|
42.3
|
1.0
|
|
O5'
|
C:ATP900
|
4.7
|
55.2
|
1.0
|
|
CE3
|
C:TRP272
|
4.7
|
61.0
|
1.0
|
|
CA
|
C:SER271
|
4.7
|
63.2
|
1.0
|
|
HA
|
C:ASP257
|
4.8
|
92.8
|
1.0
|
|
O2A
|
C:ATP900
|
4.9
|
51.3
|
1.0
|
|
H
|
C:VAL273
|
4.9
|
71.3
|
1.0
|
|
CB
|
C:SER271
|
4.9
|
77.2
|
1.0
|
|
N
|
C:SER271
|
5.0
|
66.2
|
1.0
|
|
HB2
|
C:ASP257
|
5.0
|
90.1
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 4 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1000
b:29.8
occ:1.00
|
OD1
|
D:ASP257
|
2.0
|
42.9
|
1.0
|
|
O
|
D:HOH2021
|
2.1
|
38.0
|
1.0
|
|
O3G
|
D:ATP900
|
2.1
|
39.4
|
1.0
|
|
O2B
|
D:ATP900
|
2.2
|
19.5
|
1.0
|
|
O1A
|
D:ATP900
|
2.2
|
28.6
|
1.0
|
|
O
|
D:SER271
|
2.9
|
41.0
|
1.0
|
|
CG
|
D:ASP257
|
3.1
|
46.9
|
1.0
|
|
HG
|
D:SER271
|
3.2
|
62.5
|
1.0
|
|
PB
|
D:ATP900
|
3.5
|
33.5
|
1.0
|
|
PG
|
D:ATP900
|
3.5
|
39.9
|
1.0
|
|
HH21
|
D:ARG288
|
3.5
|
54.8
|
1.0
|
|
PA
|
D:ATP900
|
3.6
|
39.6
|
1.0
|
|
OD2
|
D:ASP257
|
3.6
|
46.3
|
1.0
|
|
HH22
|
D:ARG288
|
3.6
|
54.8
|
1.0
|
|
HA
|
D:TRP272
|
3.8
|
43.4
|
1.0
|
|
O3B
|
D:ATP900
|
3.9
|
44.2
|
1.0
|
|
NH2
|
D:ARG288
|
3.9
|
45.6
|
1.0
|
|
OG
|
D:SER271
|
3.9
|
52.1
|
1.0
|
|
H5'1
|
D:ATP900
|
4.0
|
43.2
|
1.0
|
|
O3A
|
D:ATP900
|
4.0
|
30.4
|
1.0
|
|
C
|
D:SER271
|
4.0
|
47.9
|
1.0
|
|
HG21
|
D:VAL273
|
4.1
|
49.3
|
1.0
|
|
HB3
|
D:ASP257
|
4.1
|
46.4
|
1.0
|
|
H5'2
|
D:ATP900
|
4.2
|
43.2
|
1.0
|
|
CB
|
D:ASP257
|
4.2
|
38.7
|
1.0
|
|
O2G
|
D:ATP900
|
4.3
|
42.6
|
1.0
|
|
C5'
|
D:ATP900
|
4.5
|
36.0
|
1.0
|
|
O5'
|
D:ATP900
|
4.5
|
41.9
|
1.0
|
|
O1G
|
D:ATP900
|
4.6
|
42.2
|
1.0
|
|
H
|
D:VAL273
|
4.7
|
51.8
|
1.0
|
|
CA
|
D:TRP272
|
4.7
|
36.2
|
1.0
|
|
O2A
|
D:ATP900
|
4.7
|
35.8
|
1.0
|
|
HA
|
D:ASP257
|
4.7
|
47.4
|
1.0
|
|
O1B
|
D:ATP900
|
4.8
|
27.0
|
1.0
|
|
N
|
D:TRP272
|
4.8
|
40.2
|
1.0
|
|
H
|
D:SER271
|
4.8
|
58.9
|
1.0
|
|
O
|
D:SER259
|
4.9
|
97.0
|
1.0
|
|
HB2
|
D:ASP257
|
4.9
|
46.4
|
1.0
|
|
CB
|
D:SER271
|
5.0
|
32.5
|
1.0
|
|
CG2
|
D:VAL273
|
5.0
|
41.1
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 5 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1000
b:54.4
occ:1.00
|
OD1
|
E:ASP257
|
1.9
|
79.1
|
1.0
|
|
O3A
|
E:ATP900
|
2.4
|
43.1
|
1.0
|
|
O
|
E:SER271
|
2.5
|
74.3
|
1.0
|
|
O
|
E:HOH2020
|
2.8
|
58.4
|
1.0
|
|
O3G
|
E:ATP900
|
3.0
|
60.5
|
1.0
|
|
HG
|
E:SER271
|
3.1
|
98.1
|
1.0
|
|
CG
|
E:ASP257
|
3.1
|
77.3
|
1.0
|
|
O1A
|
E:ATP900
|
3.3
|
68.4
|
1.0
|
|
PB
|
E:ATP900
|
3.3
|
60.3
|
1.0
|
|
O2B
|
E:ATP900
|
3.4
|
79.5
|
1.0
|
|
PA
|
E:ATP900
|
3.5
|
68.8
|
1.0
|
|
O3B
|
E:ATP900
|
3.5
|
0.5
|
1.0
|
|
H5'2
|
E:ATP900
|
3.6
|
76.6
|
1.0
|
|
HA
|
E:TRP272
|
3.6
|
84.5
|
1.0
|
|
C
|
E:SER271
|
3.7
|
75.2
|
1.0
|
|
OD2
|
E:ASP257
|
3.8
|
84.1
|
1.0
|
|
OG
|
E:SER271
|
3.8
|
81.8
|
1.0
|
|
PG
|
E:ATP900
|
3.9
|
76.5
|
1.0
|
|
HB3
|
E:ASP257
|
4.1
|
94.6
|
1.0
|
|
O5'
|
E:ATP900
|
4.2
|
72.0
|
1.0
|
|
H5'1
|
E:ATP900
|
4.2
|
76.6
|
1.0
|
|
C5'
|
E:ATP900
|
4.2
|
63.8
|
1.0
|
|
CB
|
E:ASP257
|
4.2
|
78.8
|
1.0
|
|
HG21
|
E:VAL273
|
4.2
|
86.0
|
1.0
|
|
CA
|
E:TRP272
|
4.4
|
70.4
|
1.0
|
|
HA
|
E:ASP257
|
4.5
|
0.1
|
1.0
|
|
N
|
E:TRP272
|
4.5
|
74.1
|
1.0
|
|
HE3
|
E:TRP272
|
4.6
|
0.6
|
1.0
|
|
H
|
E:SER271
|
4.6
|
0.3
|
1.0
|
|
H
|
E:VAL273
|
4.6
|
81.9
|
1.0
|
|
O2A
|
E:ATP900
|
4.7
|
75.7
|
1.0
|
|
O1B
|
E:ATP900
|
4.7
|
61.1
|
1.0
|
|
O1G
|
E:ATP900
|
4.8
|
0.6
|
1.0
|
|
CA
|
E:SER271
|
4.8
|
80.5
|
1.0
|
|
CB
|
E:SER271
|
4.8
|
80.2
|
1.0
|
|
CE3
|
E:TRP272
|
4.8
|
85.5
|
1.0
|
|
HB2
|
E:ASP257
|
4.9
|
94.6
|
1.0
|
|
CA
|
E:ASP257
|
5.0
|
94.3
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 6 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1000
b:52.5
occ:1.00
|
O1A
|
F:ATP900
|
2.1
|
38.8
|
1.0
|
|
OD1
|
F:ASP257
|
2.2
|
52.5
|
1.0
|
|
O3G
|
F:ATP900
|
2.3
|
57.5
|
1.0
|
|
O2B
|
F:ATP900
|
2.5
|
34.5
|
1.0
|
|
O
|
F:SER271
|
3.0
|
64.2
|
1.0
|
|
CG
|
F:ASP257
|
3.1
|
48.4
|
1.0
|
|
HH21
|
F:ARG288
|
3.1
|
78.9
|
1.0
|
|
HH22
|
F:ARG288
|
3.3
|
78.9
|
1.0
|
|
OD2
|
F:ASP257
|
3.5
|
52.8
|
1.0
|
|
NH2
|
F:ARG288
|
3.5
|
65.7
|
1.0
|
|
PA
|
F:ATP900
|
3.6
|
41.6
|
1.0
|
|
PB
|
F:ATP900
|
3.6
|
52.8
|
1.0
|
|
PG
|
F:ATP900
|
3.7
|
59.6
|
1.0
|
|
HA
|
F:TRP272
|
3.8
|
59.7
|
1.0
|
|
H5'1
|
F:ATP900
|
3.9
|
59.5
|
1.0
|
|
OG
|
F:SER271
|
4.0
|
82.3
|
1.0
|
|
HG21
|
F:VAL273
|
4.0
|
52.5
|
1.0
|
|
O3B
|
F:ATP900
|
4.0
|
62.1
|
1.0
|
|
C
|
F:SER271
|
4.1
|
55.5
|
1.0
|
|
O3A
|
F:ATP900
|
4.1
|
42.1
|
1.0
|
|
H5'2
|
F:ATP900
|
4.1
|
59.5
|
1.0
|
|
HB3
|
F:ASP257
|
4.3
|
68.1
|
1.0
|
|
HG
|
F:SER271
|
4.3
|
98.8
|
1.0
|
|
CB
|
F:ASP257
|
4.4
|
56.8
|
1.0
|
|
C5'
|
F:ATP900
|
4.4
|
49.6
|
1.0
|
|
O5'
|
F:ATP900
|
4.5
|
61.0
|
1.0
|
|
O2G
|
F:ATP900
|
4.5
|
58.7
|
1.0
|
|
H
|
F:VAL273
|
4.6
|
50.5
|
1.0
|
|
O2A
|
F:ATP900
|
4.6
|
40.0
|
1.0
|
|
CA
|
F:TRP272
|
4.6
|
49.8
|
1.0
|
|
O1G
|
F:ATP900
|
4.7
|
67.4
|
1.0
|
|
N
|
F:TRP272
|
4.8
|
48.1
|
1.0
|
|
CZ
|
F:ARG288
|
4.8
|
53.2
|
1.0
|
|
HA
|
F:ASP257
|
4.9
|
66.5
|
1.0
|
|
CG2
|
F:VAL273
|
4.9
|
43.7
|
1.0
|
|
H
|
F:SER271
|
5.0
|
63.8
|
1.0
|
|
HB2
|
F:ASP257
|
5.0
|
68.1
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 7 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1000
b:52.9
occ:1.00
|
OD2
|
G:ASP257
|
2.0
|
77.3
|
1.0
|
|
O3A
|
G:ATP900
|
2.3
|
63.2
|
1.0
|
|
O
|
G:SER271
|
2.5
|
70.8
|
1.0
|
|
O
|
G:HOH2023
|
2.6
|
79.3
|
1.0
|
|
O
|
G:HOH2022
|
2.8
|
55.9
|
1.0
|
|
O2B
|
G:ATP900
|
2.9
|
73.1
|
1.0
|
|
HG
|
G:SER271
|
2.9
|
0.6
|
1.0
|
|
PB
|
G:ATP900
|
3.0
|
62.0
|
1.0
|
|
O3B
|
G:ATP900
|
3.0
|
1.0
|
1.0
|
|
O3G
|
G:ATP900
|
3.2
|
62.4
|
1.0
|
|
CG
|
G:ASP257
|
3.2
|
75.4
|
1.0
|
|
PA
|
G:ATP900
|
3.6
|
54.9
|
1.0
|
|
O1A
|
G:ATP900
|
3.6
|
62.8
|
1.0
|
|
OG
|
G:SER271
|
3.7
|
98.0
|
1.0
|
|
HA
|
G:TRP272
|
3.7
|
81.9
|
1.0
|
|
C
|
G:SER271
|
3.7
|
84.9
|
1.0
|
|
H5'2
|
G:ATP900
|
3.7
|
66.8
|
1.0
|
|
PG
|
G:ATP900
|
3.8
|
67.4
|
1.0
|
|
OD1
|
G:ASP257
|
4.0
|
72.1
|
1.0
|
|
HB3
|
G:ASP257
|
4.0
|
84.1
|
1.0
|
|
HG21
|
G:VAL273
|
4.2
|
72.7
|
1.0
|
|
O5'
|
G:ATP900
|
4.2
|
53.8
|
1.0
|
|
H5'1
|
G:ATP900
|
4.2
|
66.8
|
1.0
|
|
CB
|
G:ASP257
|
4.3
|
70.0
|
1.0
|
|
C5'
|
G:ATP900
|
4.3
|
55.6
|
1.0
|
|
O1B
|
G:ATP900
|
4.4
|
38.8
|
1.0
|
|
CA
|
G:TRP272
|
4.5
|
68.3
|
1.0
|
|
N
|
G:TRP272
|
4.5
|
83.5
|
1.0
|
|
H
|
G:SER271
|
4.5
|
98.6
|
1.0
|
|
HE3
|
G:TRP272
|
4.6
|
92.9
|
1.0
|
|
HA
|
G:ASP257
|
4.6
|
98.2
|
1.0
|
|
CB
|
G:SER271
|
4.7
|
87.0
|
1.0
|
|
CA
|
G:SER271
|
4.7
|
83.0
|
1.0
|
|
H
|
G:VAL273
|
4.7
|
79.9
|
1.0
|
|
O2A
|
G:ATP900
|
4.7
|
67.8
|
1.0
|
|
O1G
|
G:ATP900
|
4.8
|
94.2
|
1.0
|
|
O2G
|
G:ATP900
|
4.8
|
77.9
|
1.0
|
|
CE3
|
G:TRP272
|
4.9
|
77.4
|
1.0
|
|
HB2
|
G:SER271
|
4.9
|
0.4
|
1.0
|
|
HB2
|
G:ASP257
|
5.0
|
84.1
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 4cyi
Go back to
Magnesium Binding Sites List in 4cyi
Magnesium binding site 8 out
of 8 in the Chaetomium Thermophilum PAN3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Chaetomium Thermophilum PAN3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg1000
b:42.1
occ:1.00
|
OD1
|
H:ASP257
|
2.1
|
49.2
|
1.0
|
|
O1A
|
H:ATP900
|
2.2
|
41.9
|
1.0
|
|
O3G
|
H:ATP900
|
2.2
|
52.5
|
1.0
|
|
O2B
|
H:ATP900
|
2.5
|
43.9
|
1.0
|
|
O
|
H:SER271
|
3.0
|
63.3
|
1.0
|
|
CG
|
H:ASP257
|
3.1
|
37.8
|
1.0
|
|
HH22
|
H:ARG288
|
3.4
|
66.4
|
1.0
|
|
HH21
|
H:ARG288
|
3.4
|
66.4
|
1.0
|
|
OD2
|
H:ASP257
|
3.6
|
78.7
|
1.0
|
|
PG
|
H:ATP900
|
3.6
|
46.1
|
1.0
|
|
PA
|
H:ATP900
|
3.6
|
39.4
|
1.0
|
|
NH2
|
H:ARG288
|
3.6
|
55.3
|
1.0
|
|
PB
|
H:ATP900
|
3.7
|
45.2
|
1.0
|
|
HA
|
H:TRP272
|
3.8
|
64.2
|
1.0
|
|
HG21
|
H:VAL273
|
4.0
|
33.5
|
1.0
|
|
H5'2
|
H:ATP900
|
4.0
|
50.8
|
1.0
|
|
O3B
|
H:ATP900
|
4.1
|
41.5
|
1.0
|
|
O3A
|
H:ATP900
|
4.1
|
42.4
|
1.0
|
|
H5'1
|
H:ATP900
|
4.1
|
50.8
|
1.0
|
|
C
|
H:SER271
|
4.1
|
55.6
|
1.0
|
|
OG
|
H:SER271
|
4.1
|
61.9
|
1.0
|
|
HB3
|
H:ASP257
|
4.2
|
54.0
|
1.0
|
|
CB
|
H:ASP257
|
4.3
|
45.0
|
1.0
|
|
O2G
|
H:ATP900
|
4.3
|
60.8
|
1.0
|
|
C5'
|
H:ATP900
|
4.4
|
42.3
|
1.0
|
|
HG
|
H:SER271
|
4.5
|
74.3
|
1.0
|
|
O5'
|
H:ATP900
|
4.5
|
40.5
|
1.0
|
|
H
|
H:VAL273
|
4.6
|
54.7
|
1.0
|
|
O2A
|
H:ATP900
|
4.6
|
37.2
|
1.0
|
|
CA
|
H:TRP272
|
4.7
|
53.5
|
1.0
|
|
O1G
|
H:ATP900
|
4.7
|
51.3
|
1.0
|
|
HA
|
H:ASP257
|
4.8
|
55.7
|
1.0
|
|
CZ
|
H:ARG288
|
4.8
|
48.8
|
1.0
|
|
O
|
H:SER259
|
4.8
|
0.3
|
1.0
|
|
N
|
H:TRP272
|
4.9
|
45.9
|
1.0
|
|
CG2
|
H:VAL273
|
4.9
|
27.9
|
1.0
|
|
HA
|
H:ASN260
|
4.9
|
0.2
|
1.0
|
|
HB2
|
H:ASP257
|
4.9
|
54.0
|
1.0
|
|
HG22
|
H:VAL273
|
5.0
|
33.5
|
1.0
|
|
H
|
H:SER271
|
5.0
|
48.3
|
1.0
|
|
O1B
|
H:ATP900
|
5.0
|
29.8
|
1.0
|
|
Reference:
J.Wolf,
E.Valkov,
M.D.Allen,
B.Meineke,
Y.Gordiyenko,
S.H.Mclaughlin,
T.M.Olsen,
C.V.Robinson,
M.Bycroft,
M.Stewart,
L.A.Passmore.
Structural Basis For PAN3 Binding to PAN2 and Its Function in Mrna Recruitment and Deadenylation Embo J. V. 33 1514 2014.
ISSN: ISSN 0261-4189
PubMed: 24872509
DOI: 10.15252/EMBJ.201488373
Page generated: Thu Aug 15 16:54:13 2024
|
