Magnesium in PDB 4cz2: Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative.

The structure of Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative., PDB code: 4cz2 was solved by I.Perez-Dorado, I.B.Schaefer, A.J.Mccoy, D.J.Owen, P.R.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	120.89 / 2.97
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	113.050, 122.490, 131.580, 90.00, 113.25, 90.00
R / Rfree (%)	19.489 / 23.22

The binding sites of Magnesium atom in the Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative. (pdb code 4cz2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative., PDB code: 4cz2:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1199 b:15.2 occ:1.00 OG1 A:THR57 2.1 16.3 1.0 O A:HOH2003 2.1 16.0 1.0 O2B A:GCP1198 2.1 15.3 1.0 O2G A:GCP1198 2.1 14.5 1.0 OG1 A:THR39 2.1 15.1 1.0 O A:HOH2004 2.1 15.5 1.0 CB A:THR57 3.0 17.6 1.0 CB A:THR39 3.1 15.7 1.0 PG A:GCP1198 3.2 13.4 1.0 PB A:GCP1198 3.4 15.3 1.0 O1G A:GCP1198 3.7 13.3 1.0 N A:THR57 3.8 20.8 1.0 C3B A:GCP1198 3.9 14.4 1.0 CA A:THR57 3.9 18.9 1.0 OD2 A:ASP81 4.0 27.4 1.0 N A:THR39 4.0 16.1 1.0 OD1 A:ASP81 4.0 27.9 1.0 CG2 A:THR57 4.0 17.2 1.0 CA A:THR39 4.1 16.1 1.0 CG2 A:THR39 4.1 15.5 1.0 O2A A:GCP1198 4.3 16.0 1.0 O1B A:GCP1198 4.3 15.4 1.0 CG A:ASP81 4.4 27.4 1.0 O3A A:GCP1198 4.4 16.3 1.0 O3G A:GCP1198 4.5 13.5 1.0 PA A:GCP1198 4.6 17.7 1.0 O A:ARG55 4.6 22.1 1.0 O1A A:GCP1198 4.6 17.1 1.0 C A:ALA56 4.9 23.0 1.0

Magnesium binding site 2 out of 3 in the Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1199 b:18.8 occ:1.00 O B:HOH2003 1.7 18.2 1.0 O B:HOH2004 2.1 18.8 1.0 O2B B:GCP1198 2.1 16.5 1.0 O2G B:GCP1198 2.1 17.0 1.0 OG1 B:THR39 2.1 19.7 1.0 OG1 B:THR57 2.1 21.2 1.0 CB B:THR57 3.0 22.4 1.0 CB B:THR39 3.1 21.5 1.0 PG B:GCP1198 3.2 16.0 1.0 PB B:GCP1198 3.3 15.5 1.0 O1G B:GCP1198 3.6 16.4 1.0 C3B B:GCP1198 3.7 16.2 1.0 N B:THR57 3.8 23.8 1.0 CA B:THR57 4.0 22.9 1.0 O2A B:GCP1198 4.0 16.9 1.0 OD2 B:ASP81 4.0 23.3 1.0 N B:THR39 4.0 22.1 1.0 OD1 B:ASP81 4.1 26.1 1.0 CG2 B:THR57 4.1 22.0 1.0 CG2 B:THR39 4.1 21.8 1.0 CA B:THR39 4.1 22.0 1.0 O1B B:GCP1198 4.3 15.7 1.0 O3A B:GCP1198 4.3 16.5 1.0 PA B:GCP1198 4.4 17.3 1.0 O B:ARG55 4.4 30.2 1.0 CG B:ASP81 4.4 24.9 1.0 O1A B:GCP1198 4.5 17.8 1.0 O3G B:GCP1198 4.6 17.4 1.0 C B:ALA56 4.8 24.8 1.0

Magnesium binding site 3 out of 3 in the Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Complex of Human Varp-ANKRD1 with RAB32-Gppcp. Selenomet Derivative. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1199 b:26.4 occ:1.00 O C:HOH2004 1.7 26.1 1.0 O2B C:GCP1198 2.1 26.7 1.0 OG1 C:THR57 2.1 29.9 1.0 O2G C:GCP1198 2.1 25.5 1.0 OG1 C:THR39 2.1 27.6 1.0 O C:HOH2003 2.1 27.5 1.0 CB C:THR57 3.0 31.1 1.0 CB C:THR39 3.1 28.0 1.0 PG C:GCP1198 3.2 24.6 1.0 PB C:GCP1198 3.5 26.1 1.0 O1G C:GCP1198 3.5 23.6 1.0 N C:THR57 3.7 34.1 1.0 O2A C:GCP1198 3.9 28.9 1.0 C3B C:GCP1198 3.9 25.5 1.0 CA C:THR57 3.9 31.7 1.0 OD2 C:ASP81 4.1 28.0 1.0 N C:THR39 4.1 26.5 1.0 CG2 C:THR57 4.1 31.1 1.0 CG2 C:THR39 4.1 27.7 1.0 OD1 C:ASP81 4.1 28.8 1.0 CA C:THR39 4.1 28.0 1.0 O1B C:GCP1198 4.3 26.1 1.0 O C:ARG55 4.4 43.1 1.0 PA C:GCP1198 4.5 29.4 1.0 CG C:ASP81 4.5 28.8 1.0 O3A C:GCP1198 4.5 27.0 1.0 O3G C:GCP1198 4.6 24.5 1.0 O1A C:GCP1198 4.7 29.6 1.0 C C:ALA56 4.8 36.5 1.0

G.G.Hesketh, I.Perez-Dorado, L.P.Jackson, L.Wartosch, I.B.Schefer, S.R.Gray, A.J.Mccoy, O.B.Zeldin, E.F.Garman, M.E.Harbour, P.R.Evans, M.N.Seaman, J.P.Luzio, D.J.Owen. Varp Is Recruited on to Endosomes By Direct Interaction with Retromer, Where Together They Function in Export to the Cell Surface. Dev.Cell V. 29 591 2014.
ISSN: ISSN 1534-5807
PubMed: 24856514
DOI: 10.1016/J.DEVCEL.2014.04.010