Magnesium in PDB 4dxi: Crystal Structure of An Ancestor of All Faviina Proteins

The structure of Crystal Structure of An Ancestor of All Faviina Proteins, PDB code: 4dxi was solved by H.Kim, R.M.Wachter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.12 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	106.488, 93.058, 88.998, 90.00, 92.72, 90.00
R / Rfree (%)	17.3 / 21

The binding sites of Magnesium atom in the Crystal Structure of An Ancestor of All Faviina Proteins (pdb code 4dxi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of An Ancestor of All Faviina Proteins, PDB code: 4dxi:

Magnesium binding site 1 out of 1 in the Crystal Structure of An Ancestor of All Faviina Proteins


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Ancestor of All Faviina Proteins within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:24.0 occ:1.00 O A:HOH598 2.9 14.2 1.0 N A:ASP150 3.3 14.3 1.0 O A:HOH425 3.6 13.0 1.0 CA A:ARG149 3.7 13.0 1.0 O A:HOH548 3.7 31.1 1.0 O B:HOH518 3.8 37.7 1.0 OD1 A:ASP150 3.9 21.2 1.0 CD A:ARG149 3.9 13.8 1.0 C A:ARG149 4.0 13.6 1.0 O A:VAL148 4.0 11.6 1.0 NE A:ARG149 4.2 12.3 1.0 CA B:GLY167 4.2 13.4 1.0 CA A:ASP150 4.3 14.8 1.0 N A:ARG149 4.5 11.9 1.0 C A:VAL148 4.6 11.6 1.0 CB A:ARG149 4.6 12.6 1.0 CG A:ASP150 4.7 18.2 1.0 CG A:ARG149 4.8 14.6 1.0

H.Kim, T.Zou, C.Modi, K.Dorner, T.J.Grunkemeyer, L.Chen, R.Fromme, M.V.Matz, S.B.Ozkan, R.M.Wachter. A Hinge Migration Mechanism Unlocks the Evolution of Green-to-Red Photoconversion in Gfp-Like Proteins. Structure V. 23 34 2015.
ISSN: ISSN 0969-2126
PubMed: 25565105
DOI: 10.1016/J.STR.2014.11.011