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Magnesium in PDB 4dxv: Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution

Enzymatic activity of Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution

All present enzymatic activity of Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution:
4.2.1.52;

Protein crystallography data

The structure of Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution, PDB code: 4dxv was solved by M.Kumar, S.Kaushik, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.24 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.350, 122.470, 52.330, 90.00, 115.92, 90.00
R / Rfree (%) 15.2 / 19.9

Other elements in 4dxv:

The structure of Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution (pdb code 4dxv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution, PDB code: 4dxv:

Magnesium binding site 1 out of 1 in 4dxv

Go back to Magnesium Binding Sites List in 4dxv
Magnesium binding site 1 out of 1 in the Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:18.3
occ:1.00
OG1 A:THR104 2.7 15.2 1.0
OG1 A:THR139 2.8 9.3 1.0
N A:VAL135 2.8 9.8 1.0
OD1 A:ASN134 2.9 11.0 1.0
O A:VAL141 3.0 8.4 1.0
C A:VAL135 3.4 10.9 1.0
CG2 A:THR139 3.4 7.6 1.0
N A:PRO136 3.5 9.9 1.0
CA A:ASN134 3.6 9.1 1.0
CB A:THR139 3.6 8.1 1.0
O A:VAL135 3.6 10.7 1.0
C A:ASN134 3.7 9.8 1.0
CG2 A:THR104 3.8 11.1 1.0
CA A:PRO136 3.8 10.8 1.0
CG A:ASN134 3.8 12.8 1.0
CB A:THR104 3.8 12.5 1.0
CA A:VAL135 3.8 9.0 1.0
C A:VAL141 4.1 10.3 1.0
CD A:PRO136 4.1 10.3 1.0
CG1 A:VAL141 4.2 12.0 1.0
CB A:ASN134 4.3 11.5 1.0
O A:TYR133 4.3 10.5 1.0
CG A:PRO136 4.4 8.0 1.0
CG1 A:VAL135 4.4 8.5 1.0
CB A:PRO136 4.7 10.8 1.0
CB A:VAL135 4.8 10.0 1.0
N A:ASN134 4.8 8.4 1.0
O A:ASN134 4.8 9.4 1.0
CA A:ASP142 4.8 9.8 1.0
ND2 A:ASN134 4.9 11.3 1.0
N A:THR104 4.9 11.8 1.0
N A:ASP142 4.9 10.5 1.0
N A:LEU143 4.9 9.8 1.0
CA A:THR104 4.9 12.1 1.0
C A:PRO136 5.0 11.8 1.0
CA A:THR139 5.0 7.4 1.0
N A:VAL141 5.0 11.6 1.0
C A:TYR133 5.0 9.6 1.0

Reference:

M.Kumar, S.Kaushik, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed with Mg and Cl Ions at 1.80 A Resolution To Be Published.
Page generated: Mon Dec 14 13:22:42 2020

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