Magnesium in PDB 4e7p: Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride

The structure of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride, PDB code: 4e7p was solved by A.K.Park, J.H.Moon, K.S.Lee, Y.M.Chi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.65 / 1.89
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	75.837, 83.984, 49.511, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 22.6

The structure of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride also contains other interesting chemical elements:

Fluorine

(F)

6 atoms

The binding sites of Magnesium atom in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride (pdb code 4e7p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride, PDB code: 4e7p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:4.2 occ:1.00 O A:GLU55 2.2 14.0 1.0 OD1 A:ASP53 2.2 11.7 1.0 OD1 A:ASP8 2.3 15.1 1.0 F3 A:BEF202 2.3 12.8 1.0 O A:HOH301 2.4 12.7 1.0 O A:HOH392 2.5 26.9 1.0 CG A:ASP53 3.2 13.0 1.0 CG A:ASP8 3.3 17.8 1.0 C A:GLU55 3.4 13.6 1.0 BE A:BEF202 3.4 14.9 1.0 OD2 A:ASP53 3.5 11.8 1.0 OD2 A:ASP8 3.6 17.7 1.0 OE2 A:GLU7 4.0 13.8 1.0 CA A:GLU55 4.2 13.7 1.0 O A:HOH317 4.2 22.1 1.0 F2 A:BEF202 4.2 13.1 1.0 CB A:GLU55 4.3 14.9 1.0 N A:MET56 4.4 14.0 1.0 F1 A:BEF202 4.4 12.9 1.0 N A:GLU55 4.5 11.2 1.0 O A:HOH430 4.5 35.8 1.0 CB A:ASP53 4.6 11.0 1.0 O A:HOH426 4.6 37.5 1.0 CB A:ASP8 4.6 14.5 1.0 CA A:MET56 4.7 12.9 1.0 N A:ASP8 4.7 11.5 1.0 NZ A:LYS103 4.7 13.3 1.0 O A:HOH358 4.7 32.8 1.0 CG A:MET56 4.8 19.4 1.0 CD A:GLU7 4.8 12.2 1.0 OE1 A:GLU7 4.9 11.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Presence of the Phosphoryl Analog Beryllofluoride within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:6.5 occ:1.00 O B:GLU55 2.2 18.1 1.0 OD1 B:ASP53 2.3 13.5 1.0 OD1 B:ASP8 2.3 14.1 1.0 O B:HOH303 2.3 17.2 1.0 F2 B:BEF202 2.4 13.1 1.0 O B:HOH382 2.6 24.9 1.0 O B:HOH419 2.7 29.9 1.0 CG B:ASP8 3.2 18.6 1.0 CG B:ASP53 3.3 16.5 1.0 C B:GLU55 3.4 15.9 1.0 BE B:BEF202 3.5 16.8 1.0 OD2 B:ASP8 3.5 23.6 1.0 OD2 B:ASP53 3.6 12.8 1.0 OE2 B:GLU7 4.1 13.5 1.0 CA B:GLU55 4.2 16.6 1.0 CB B:GLU55 4.2 21.2 1.0 F1 B:BEF202 4.3 13.6 1.0 O B:HOH306 4.3 26.5 1.0 N B:MET56 4.4 16.1 1.0 O B:HOH346 4.4 32.1 1.0 N B:GLU55 4.5 14.2 1.0 F3 B:BEF202 4.5 13.4 1.0 O B:HOH406 4.5 35.5 1.0 CG B:MET56 4.6 16.4 1.0 CB B:ASP8 4.6 15.1 1.0 CA B:MET56 4.6 16.5 1.0 CB B:ASP53 4.6 13.8 1.0 NZ B:LYS103 4.9 14.1 1.0 N B:ASP8 4.9 12.8 1.0 CD B:GLU7 4.9 14.0 1.0 OE1 B:GLU7 4.9 11.5 1.0

A.K.Park, J.H.Moon, K.S.Lee, Y.M.Chi. Crystal Structure of Receiver Domain of Putative Narl Family Response Regulator SPR1814 From Streptococcus Pneumoniae in the Absence and Presence of the Phosphoryl Analog Beryllofluoride. Biochem.Biophys.Res.Commun. V. 421 403 2012.
ISSN: ISSN 0006-291X
PubMed: 22521891
DOI: 10.1016/J.BBRC.2012.04.035