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Magnesium in PDB 4efc: Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560

Enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560

All present enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560:
4.3.2.2;

Protein crystallography data

The structure of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560, PDB code: 4efc was solved by A.K.Wernimont, P.Loppnau, K.T.Osman, C.H.Arrowsmith, A.M.Edwards, C.Bountra, D.A.Robinson, P.G.Wyatt, I.H.Gilbert, A.H.Fairlamb, R.Hui, Y.H.Lin, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 107.768, 140.744, 60.403, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 19.1

Other elements in 4efc:

The structure of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 (pdb code 4efc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560, PDB code: 4efc:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4efc

Go back to Magnesium Binding Sites List in 4efc
Magnesium binding site 1 out of 3 in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:16.7
occ:1.00
 O A:HOH691 2.1 17.3 1.0
OD2 A:ASP289 2.3 17.2 1.0
OD1 A:ASP285 3.0 12.3 1.0
CG A:ASP289 3.2 13.3 1.0
OD1 A:ASP289 3.5 13.7 1.0
OD2 A:ASP285 3.6 11.7 1.0
CG A:ASP285 3.7 10.8 1.0
O A:HOH905 4.0 20.8 1.0
O A:HOH698 4.2 14.3 1.0
CZ2 A:TRP201 4.4 11.2 1.0
CB A:ASP289 4.6 11.5 1.0
O A:ASP285 4.8 9.0 1.0
O A:HOH702 5.0 12.8 1.0

Magnesium binding site 2 out of 3 in 4efc

Go back to Magnesium Binding Sites List in 4efc
Magnesium binding site 2 out of 3 in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg504

b:37.6
occ:1.00
 O A:HOH973 2.1 31.4 1.0
O A:ARG72 2.2 18.6 1.0
O A:HOH972 2.4 25.6 1.0
O A:HOH954 2.4 34.0 1.0
C A:ARG72 3.4 18.1 1.0
O A:HOH974 3.7 34.3 1.0
N A:SER73 4.3 18.0 1.0
O A:HOH726 4.3 21.9 1.0
CA A:SER73 4.3 19.0 1.0
CA A:ARG72 4.3 17.2 1.0
O A:HOH821 4.4 23.3 1.0
O A:HOH774 4.4 31.6 1.0
O A:VAL74 4.7 17.3 1.0
CB A:ARG72 4.7 17.4 1.0
C A:SER73 4.7 18.4 1.0

Magnesium binding site 3 out of 3 in 4efc

Go back to Magnesium Binding Sites List in 4efc
Magnesium binding site 3 out of 3 in the Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg503

b:17.6
occ:1.00
 O B:SER346 2.2 9.9 1.0
O B:HOH897 2.3 16.0 1.0
O B:LEU348 2.6 10.6 1.0
N B:LEU348 3.3 12.0 1.0
C B:SER346 3.4 11.2 1.0
C B:LEU348 3.5 10.6 1.0
O B:HOH628 3.5 10.7 1.0
CA B:LEU348 3.7 11.3 1.0
O B:HOH896 3.7 20.4 1.0
C B:ARG347 3.8 12.3 1.0
CA B:ARG347 4.2 12.0 1.0
N B:ARG347 4.3 11.4 1.0
N B:SER346 4.4 11.1 1.0
CA B:SER346 4.4 11.2 1.0
O B:ARG347 4.5 12.0 1.0
N B:GLN349 4.7 10.3 1.0
CB B:SER346 4.8 11.1 1.0

Reference:

A.K.Wernimont, P.Loppnau, K.T.Osman, C.H.Arrowsmith, A.M.Edwards, C.Bountra, D.A.Robinson, P.G.Wyatt, I.H.Gilbert, R.Hui, Y.H.Lin. Crystal Structure of Adenylosuccinate Lyase From Trypanosoma Brucei, TB427TMP.160.5560 To Be Published.
Page generated: Mon Dec 14 14:00:14 2020

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