Magnesium in PDB 4ev6: The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii

The structure of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii, PDB code: 4ev6 was solved by A.Guskov, N.Nordin, A.Reynaud, H.Engman, A.-K.Lundback, A.J.O.Jong, T.Cornvik, T.Phua, S.Eshaghi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.44 / 3.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	103.110, 124.830, 111.880, 90.00, 90.76, 90.00
R / Rfree (%)	20.5 / 28.2

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Magnesium atom in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii (pdb code 4ev6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 32 binding sites of Magnesium where determined in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii, PDB code: 4ev6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:74.4 occ:1.00 CD2 A:LEU118 3.6 89.3 1.0 OE2 A:GLU142 4.5 74.8 1.0 OE1 E:GLU68 4.6 90.1 1.0 CG A:LEU118 4.8 94.9 1.0 CD E:GLU68 4.8 88.0 1.0 OE2 E:GLU68 4.8 93.2 1.0

Magnesium binding site 2 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg404 b:77.2 occ:1.00 OD2 A:ASP70 3.2 0.2 1.0 OD1 A:ASP70 3.8 0.8 1.0 CG A:ASP70 4.0 0.4 1.0 OD2 A:ASP54 4.1 99.3 1.0 O A:HOH519 4.5 80.7 1.0 CG A:ASP54 5.0 98.1 1.0 OD1 A:ASP54 5.0 99.6 1.0

Magnesium binding site 3 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:93.2 occ:1.00 MG A:MG408 2.9 94.8 1.0 MG A:MG409 3.4 0.6 1.0 OD1 A:ASN98 3.4 0.3 1.0 CA A:ASP72 3.6 0.6 1.0 C A:ASP72 3.9 0.5 1.0 N A:ASN98 3.9 79.1 1.0 O A:HOH527 4.1 84.6 1.0 O A:HOH516 4.1 63.9 1.0 O A:ASP72 4.1 0.4 1.0 N A:PHE73 4.4 90.6 1.0 N A:ASP72 4.4 0.2 1.0 CG A:ASN98 4.5 0.5 1.0 CA A:LYS97 4.5 71.1 1.0 CB A:LYS97 4.5 76.3 1.0 CB A:ASP72 4.5 0.1 1.0 MG A:MG406 4.6 96.3 1.0 C A:LYS97 4.7 72.6 1.0 CA A:ASN98 4.8 87.6 1.0 CA A:PHE73 4.9 85.6 1.0

Magnesium binding site 4 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg406 b:96.3 occ:1.00 OE2 A:GLU69 3.0 0.2 1.0 OE1 A:GLU69 3.4 0.9 1.0 O A:HOH516 3.5 63.9 1.0 CD A:GLU69 3.6 0.1 1.0 MG A:MG409 3.8 0.6 1.0 CE1 A:TYR74 4.1 88.8 1.0 N A:ASP72 4.1 0.2 1.0 MG A:MG408 4.1 94.8 1.0 O A:ASP70 4.1 0.8 1.0 OE2 A:GLU71 4.2 0.8 1.0 CA A:GLU71 4.6 0.6 1.0 MG A:MG405 4.6 93.2 1.0 CD1 A:TYR74 4.7 82.6 1.0 CZ A:TYR74 4.7 88.4 1.0 OH A:TYR74 4.7 91.8 1.0 C A:GLU71 4.8 0.4 1.0 CA A:ASP72 4.8 0.6 1.0 N A:PHE73 4.8 90.6 1.0 C A:ASP70 4.9 0.4 1.0

Magnesium binding site 5 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg407 b:66.1 occ:1.00 OE2 A:GLU162 2.8 0.4 1.0 CD A:GLU162 4.0 0.4 1.0 CG E:LYS182 4.0 55.4 1.0 CB E:LYS182 4.2 53.3 1.0 CA E:LYS182 4.2 51.2 1.0 O E:HOH509 4.4 60.7 1.0 CG1 A:VAL237 4.4 58.4 1.0 CG A:GLU162 4.6 0.3 1.0 CD2 A:LEU158 4.7 71.6 1.0 CD E:LYS182 4.8 58.6 1.0 OE1 A:GLU162 4.9 0.4 1.0 CB E:VAL185 4.9 35.0 1.0 CG2 E:VAL185 5.0 38.4 1.0

Magnesium binding site 6 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg408 b:94.8 occ:1.00 MG A:MG405 2.9 93.2 1.0 O A:HOH516 3.0 63.9 1.0 CD1 A:TYR74 3.8 82.6 1.0 O A:ILE96 4.1 60.1 1.0 MG A:MG406 4.1 96.3 1.0 CE1 A:TYR74 4.1 88.8 1.0 N A:ASN98 4.2 79.1 1.0 CA A:LYS97 4.2 71.1 1.0 CA A:PHE73 4.5 85.6 1.0 CG2 A:ILE208 4.5 54.6 1.0 N A:PHE73 4.6 90.6 1.0 C A:LYS97 4.7 72.6 1.0 C A:PHE73 4.8 84.6 1.0 C A:ILE96 4.9 60.4 1.0 C A:ASP72 4.9 0.5 1.0 N A:TYR74 4.9 80.6 1.0 CB A:LYS97 4.9 76.3 1.0

Magnesium binding site 7 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg409 b:0.6 occ:1.00 O A:HOH527 2.0 84.6 1.0 OE2 A:GLU71 2.8 0.8 1.0 MG A:MG405 3.4 93.2 1.0 CD A:GLU71 3.6 0.9 1.0 N A:ASP72 3.6 0.2 1.0 OE1 A:GLU71 3.7 0.5 1.0 CA A:ASP72 3.7 0.6 1.0 MG A:MG406 3.8 96.3 1.0 CB A:ASP72 4.3 0.1 1.0 C A:GLU71 4.7 0.4 1.0 O A:HOH516 4.7 63.9 1.0 CG A:GLU71 4.9 0.6 1.0

Magnesium binding site 8 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg403 b:77.0 occ:1.00 OD1 C:ASN280 3.7 86.0 1.0 OD1 B:ASN280 4.0 78.0 1.0 O B:GLY278 4.1 84.9 1.0 MG C:MG402 4.1 55.6 1.0 O A:GLY278 4.2 91.6 1.0 OD1 A:ASN280 4.2 76.7 1.0 O C:GLY278 4.3 68.4 1.0 O D:GLY278 4.4 93.9 1.0 OD1 D:ASN280 4.4 77.6 1.0 O E:GLY278 4.4 62.1 1.0 OD1 E:ASN280 4.5 77.1 1.0 ND2 B:ASN280 4.8 88.0 1.0 CG B:ASN280 4.8 84.4 1.0 CG C:ASN280 4.9 87.5 1.0

Magnesium binding site 9 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg404 b:61.0 occ:1.00 CG2 B:THR264 3.3 53.1 1.0 O E:HOH561 3.4 51.4 1.0 O C:HOH518 3.4 44.5 1.0 OG1 B:THR264 3.4 64.7 1.0 CB B:THR264 4.0 59.5 1.0 OG1 C:THR264 4.0 70.6 1.0 CD1 A:LEU260 4.0 82.3 1.0 MG B:MG405 4.2 75.3 1.0 OG1 A:THR264 4.4 86.1 1.0 CD1 B:LEU260 4.5 59.8 1.0 CG B:LEU260 4.6 58.4 1.0 CG2 C:THR264 4.7 59.4 1.0 CD2 B:LEU260 4.8 59.0 1.0 O C:HOH531 4.9 70.7 1.0 CG A:LEU260 4.9 81.9 1.0 CD2 A:LEU260 4.9 79.2 1.0 CB C:THR264 5.0 65.8 1.0

Magnesium binding site 10 out of 32 in the The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Complete Structure of Cora Magnesium Transporter From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg405 b:75.3 occ:1.00 O B:HOH538 3.6 64.1 1.0 O C:HOH531 3.7 70.7 1.0 MG B:MG404 4.2 61.0 1.0 O C:HOH536 4.6 44.4 1.0 CG2 B:THR264 4.6 53.1 1.0 O C:HOH518 4.7 44.5 1.0

A.Guskov, N.Nordin, A.Reynaud, H.Engman, A.K.Lundback, A.J.Jong, T.Cornvik, T.Phua, S.Eshaghi. Structural Insights Into the Mechanisms of MG2+ Uptake, Transport, and Gating By Cora Proc.Natl.Acad.Sci.Usa V. 109 18459 2012.
ISSN: ISSN 0027-8424
PubMed: 23091000
DOI: 10.1073/PNAS.1210076109