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Magnesium in PDB 4fut: Crystal Structure of Atp Bound Matb From Rhodopseudomonas Palustris

Protein crystallography data

The structure of Crystal Structure of Atp Bound Matb From Rhodopseudomonas Palustris, PDB code: 4fut was solved by K.C.Rank, H.A.Crosby, J.C.Escalante-Semerena, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.99 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 173.140, 173.140, 47.739, 90.00, 90.00, 120.00
R / Rfree (%) 15.8 / 19.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Atp Bound Matb From Rhodopseudomonas Palustris (pdb code 4fut). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Atp Bound Matb From Rhodopseudomonas Palustris, PDB code: 4fut:

Magnesium binding site 1 out of 1 in 4fut

Go back to Magnesium Binding Sites List in 4fut
Magnesium binding site 1 out of 1 in the Crystal Structure of Atp Bound Matb From Rhodopseudomonas Palustris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Atp Bound Matb From Rhodopseudomonas Palustris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg607

b:31.6
occ:1.00
O3G A:ATP608 2.1 34.0 1.0
O1B A:ATP608 2.2 27.5 1.0
O A:HOH1064 2.2 27.4 1.0
O A:HOH1065 2.3 23.5 1.0
O A:HOH775 2.3 21.8 1.0
O A:HOH802 2.3 26.1 1.0
PG A:ATP608 3.2 36.3 1.0
PB A:ATP608 3.4 28.4 1.0
O1G A:ATP608 3.5 45.6 1.0
O3B A:ATP608 3.7 24.9 1.0
O3A A:ATP608 3.9 33.5 1.0
O A:HOH777 4.0 31.0 1.0
OE2 A:GLU304 4.1 30.7 1.0
NH2 A:ARG397 4.3 25.2 1.0
OE1 A:GLU304 4.3 25.7 1.0
CE A:MET302 4.3 28.4 1.0
O A:HOH1024 4.4 47.5 1.0
O3' A:ATP608 4.5 26.6 1.0
O2G A:ATP608 4.5 36.5 1.0
O A:HOH771 4.5 39.1 1.0
O1A A:ATP608 4.6 25.8 1.0
CD A:GLU304 4.7 32.8 1.0
CG2 A:THR163 4.7 35.6 1.0
O2B A:ATP608 4.7 22.7 1.0
PA A:ATP608 4.7 28.2 1.0
C5' A:ATP608 4.8 22.4 1.0
O5' A:ATP608 4.8 28.2 1.0
CB A:THR163 4.8 35.7 1.0
C4' A:ATP608 4.9 25.3 1.0

Reference:

H.A.Crosby, K.C.Rank, I.Rayment, J.C.Escalante-Semerena. Structure-Guided Expansion of the Substrate Range of Methylmalonyl Coenzyme A Synthetase (Matb) of Rhodopseudomonas Palustris. Appl.Environ.Microbiol. V. 78 6619 2012.
ISSN: ISSN 0099-2240
PubMed: 22773649
DOI: 10.1128/AEM.01733-12
Page generated: Mon Dec 14 15:44:03 2020

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