Magnesium in PDB 4fzl: High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000

The structure of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzl was solved by A.W.Roszak, R.Grinter, J.R.Cogdell, D.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.92 / 1.46
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.810, 96.090, 64.270, 90.00, 114.17, 90.00
R / Rfree (%)	15.2 / 20.1

The structure of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Calcium	(Ca)	2 atoms

The binding sites of Magnesium atom in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 (pdb code 4fzl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000, PDB code: 4fzl:

Magnesium binding site 1 out of 1 in the High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of High Resolution Structure of Truncated Bacteriocin Syringacin M From Pseudomonas Syringae Pv. Tomato DC3000 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:30.8 occ:1.00 O1 B:EDO308 1.9 34.7 1.0 O B:HOH529 1.9 43.1 1.0 O B:HOH528 2.1 48.2 1.0 O B:HOH522 2.2 34.8 1.0 OD2 B:ASP214 2.2 49.7 1.0 O2 B:EDO308 2.5 39.3 1.0 OD1 B:ASP214 2.5 38.4 1.0 C1 B:EDO308 2.7 38.7 1.0 CG B:ASP214 2.7 41.7 1.0 C2 B:EDO308 3.0 33.9 1.0 OD1 B:ASN216 3.8 31.8 1.0 CB B:ASP214 4.2 28.0 1.0 OG1 B:THR180 4.4 47.0 1.0 O B:LYS215 4.6 34.0 1.0 O2 B:EDO306 4.6 40.0 1.0 CA B:GLY179 4.7 36.1 1.0 O B:HOH599 4.8 44.5 1.0 C B:GLY179 4.9 41.8 1.0 CA B:ASP214 4.9 27.5 1.0

R.Grinter, A.W.Roszak, R.J.Cogdell, J.J.Milner, D.Walker. The Crystal Structure of the Lipid II-Degrading Bacteriocin Syringacin M Suggests Unexpected Evolutionary Relationships Between Colicin M-Like Bacteriocins. J.Biol.Chem. V. 287 38876 2012.
ISSN: ISSN 0021-9258
PubMed: 22995910
DOI: 10.1074/JBC.M112.400150