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Magnesium in PDB 4g0n: Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase

Enzymatic activity of Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase

All present enzymatic activity of Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase, PDB code: 4g0n was solved by S.K.Fetics, B.M.Kearney, G.Buhrman, C.Mattos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.37 / 2.45
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.440, 90.440, 92.703, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 22.9

Other elements in 4g0n:

The structure of Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase (pdb code 4g0n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase, PDB code: 4g0n:

Magnesium binding site 1 out of 1 in 4g0n

Go back to Magnesium Binding Sites List in 4g0n
Magnesium binding site 1 out of 1 in the Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Wt H-Ras-Gppnhp Bound to the Rbd of Raf Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:43.4
occ:1.00
 O2G A:GNP201 1.9 42.1 1.0
OG1 A:THR35 2.0 44.1 1.0
O2B A:GNP201 2.0 37.4 1.0
OG A:SER17 2.0 39.5 1.0
O A:HOH335 2.1 28.3 1.0
O A:HOH344 2.1 31.4 1.0
CB A:THR35 3.1 39.1 1.0
PG A:GNP201 3.1 39.2 1.0
CB A:SER17 3.2 27.2 1.0
PB A:GNP201 3.2 36.9 1.0
N3B A:GNP201 3.3 47.6 1.0
OD2 A:ASP57 3.7 52.7 1.0
N A:THR35 3.7 36.5 1.0
O2A A:GNP201 3.8 42.8 1.0
N A:SER17 3.9 38.3 1.0
CA A:THR35 4.0 36.5 1.0
O A:HOH334 4.0 42.7 1.0
O3G A:GNP201 4.0 31.9 1.0
CA A:SER17 4.1 37.3 1.0
CG2 A:THR35 4.2 44.5 1.0
O1B A:GNP201 4.2 36.5 1.0
O3A A:GNP201 4.2 36.3 1.0
OD1 A:ASP57 4.3 57.8 1.0
PA A:GNP201 4.3 41.6 1.0
O1G A:GNP201 4.3 46.3 1.0
CG A:ASP57 4.4 57.0 1.0
O1A A:GNP201 4.4 32.7 1.0
O A:ASP33 4.4 51.9 1.0
O A:THR58 4.6 55.1 1.0
C A:PRO34 4.7 44.0 1.0
O A:HOH366 4.8 43.2 1.0
CB A:LYS16 4.9 35.6 1.0
C A:LYS16 4.9 38.4 1.0
CA A:PRO34 5.0 45.2 1.0

Reference:

S.K.Fetics, H.Guterres, B.M.Kearney, G.Buhrman, B.Ma, R.Nussinov, C.Mattos. Allosteric Effects of the Oncogenic RASQ61L Mutant on Raf-Rbd. Structure V. 23 505 2015.
ISSN: ISSN 0969-2126
PubMed: 25684575
DOI: 10.1016/J.STR.2014.12.017
Page generated: Fri Aug 16 15:20:10 2024

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