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Magnesium in PDB 4g7y: Crystal Structure of Voltage Sensing Domain of Ci-Vsp with Fragment Antibody (R217E, 2.8 A)

Protein crystallography data

The structure of Crystal Structure of Voltage Sensing Domain of Ci-Vsp with Fragment Antibody (R217E, 2.8 A), PDB code: 4g7y was solved by Q.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 104.80 / 2.80
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 121.010, 121.010, 229.570, 90.00, 90.00, 120.00
R / Rfree (%) 20.6 / 26.1

Other elements in 4g7y:

The structure of Crystal Structure of Voltage Sensing Domain of Ci-Vsp with Fragment Antibody (R217E, 2.8 A) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Voltage Sensing Domain of Ci-Vsp with Fragment Antibody (R217E, 2.8 A) (pdb code 4g7y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Voltage Sensing Domain of Ci-Vsp with Fragment Antibody (R217E, 2.8 A), PDB code: 4g7y:

Magnesium binding site 1 out of 1 in 4g7y

Go back to Magnesium Binding Sites List in 4g7y
Magnesium binding site 1 out of 1 in the Crystal Structure of Voltage Sensing Domain of Ci-Vsp with Fragment Antibody (R217E, 2.8 A)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Voltage Sensing Domain of Ci-Vsp with Fragment Antibody (R217E, 2.8 A) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:46.7
occ:1.00
O H:HOH305 2.4 43.9 1.0
O H:HOH302 2.4 38.6 1.0
O H:HOH304 2.6 33.6 1.0
O L:HOH410 2.6 29.9 1.0
O H:HOH303 2.7 34.4 1.0
OD2 L:ASP167 3.0 62.5 1.0
O L:HOH409 3.3 39.7 1.0
CA L:ASP167 3.8 46.1 1.0
CG L:ASP167 3.8 57.9 1.0
CB L:ASP167 4.2 54.1 1.0
O L:GLU165 4.2 41.8 1.0
N L:ASP167 4.4 40.4 1.0
CE1 H:HIS170 4.5 45.7 1.0
ND1 H:HIS170 4.6 43.8 1.0
OD1 L:ASP167 4.8 60.3 1.0
O L:GLN166 4.8 47.7 1.0
C L:GLN166 4.8 40.8 1.0
C L:ASP167 4.9 47.9 1.0
N L:SER168 5.0 50.9 1.0

Reference:

Q.Li, M.Paduch, S.Wanderling, R.E.Hulse, S.Koide, A.Kosiakoff, E.Perozo. Structural Rearrangement in Voltage Sensing Domain of Ci-Vsp To Be Published.
Page generated: Mon Dec 14 16:08:33 2020

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