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Magnesium in PDB 4g9b: Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid

Enzymatic activity of Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid

All present enzymatic activity of Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid:
5.4.2.6;

Protein crystallography data

The structure of Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid, PDB code: 4g9b was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, D.Dunaway-Mariano, K.N.Allen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.59 / 1.70
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 129.168, 129.168, 85.766, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 20.4

Other elements in 4g9b:

The structure of Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid (pdb code 4g9b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid, PDB code: 4g9b:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4g9b

Go back to Magnesium Binding Sites List in 4g9b
Magnesium binding site 1 out of 3 in the Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:16.8
occ:1.00
 OD2 A:ASP9 2.0 20.7 1.0
O A:ASP11 2.0 20.7 1.0
O A:HOH401 2.0 17.9 1.0
OD1 A:ASP172 2.1 19.3 1.0
O A:HOH403 2.1 22.0 1.0
O A:HOH402 2.1 22.0 1.0
CG A:ASP9 3.0 19.3 1.0
CG A:ASP172 3.1 19.8 1.0
C A:ASP11 3.2 20.3 1.0
OD1 A:ASP9 3.4 18.5 1.0
OD2 A:ASP172 3.4 18.8 1.0
OE1 A:GLU171 3.9 19.5 1.0
CA A:ASP11 4.0 19.7 1.0
CB A:ASP11 4.1 22.3 1.0
N A:GLY12 4.1 20.9 1.0
OD2 A:ASP11 4.2 38.4 1.0
N A:ASP11 4.2 17.9 1.0
CA A:GLY12 4.3 22.2 1.0
CB A:ASP9 4.4 16.2 1.0
O A:HOH506 4.4 37.4 1.0
CB A:ASP172 4.4 19.3 1.0
N A:ASP172 4.5 14.6 1.0
O A:HOH579 4.5 46.8 1.0
CD A:GLU171 4.6 18.9 1.0
CG A:ASP11 4.6 31.6 1.0
O A:HOH565 4.7 47.4 1.0
OE2 A:GLU171 4.7 21.1 1.0
CB A:ALA173 4.8 24.3 1.0
C A:GLY12 4.8 20.6 1.0
CG2 A:VAL13 4.8 17.4 1.0
N A:ALA173 4.9 17.3 1.0
CA A:ASP172 4.9 16.7 1.0
C A:LEU10 4.9 19.1 0.3
C A:LEU10 4.9 16.1 0.7
N A:VAL13 5.0 18.2 1.0

Magnesium binding site 2 out of 3 in 4g9b

Go back to Magnesium Binding Sites List in 4g9b
Magnesium binding site 2 out of 3 in the Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:14.9
occ:0.50
 O A:HOH405 2.1 14.1 1.0
O A:HOH404 2.1 12.2 1.0
O A:HOH406 2.1 17.5 1.0
OE1 A:GLN198 3.9 16.4 1.0
O A:MET185 4.0 15.8 1.0
O A:HOH549 4.1 22.2 1.0
O A:ASN181 4.2 15.0 1.0
OD1 A:ASN181 4.5 16.3 1.0
CD A:GLN198 4.6 15.7 1.0
CA A:ASN181 4.8 11.2 1.0
C A:MET185 4.9 15.6 1.0
C A:GLY184 5.0 16.4 1.0
O A:GLY184 5.0 16.7 1.0
C A:ASN181 5.0 13.5 1.0

Magnesium binding site 3 out of 3 in 4g9b

Go back to Magnesium Binding Sites List in 4g9b
Magnesium binding site 3 out of 3 in the Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:19.2
occ:0.60
 O A:HOH567 2.0 27.3 0.6
O A:HOH496 2.1 27.7 0.6
O A:HOH551 2.1 23.8 0.6
O A:HOH568 2.1 25.2 0.6
O A:HOH423 2.1 17.8 0.6
O A:HOH449 2.1 23.5 0.6
O A:LEU89 4.1 25.2 1.0
O A:ALA127 4.3 22.9 1.0
O A:HOH461 4.4 26.0 1.0
O A:HOH530 4.5 35.5 1.0
O A:ARG87 4.5 21.8 1.0
O A:HOH482 4.7 41.7 1.0
CA A:ALA127 4.9 24.2 1.0
OE2 A:GLU129 5.0 48.2 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, D.Dunaway-Mariano, K.N.Allen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, with Bound Mg, Open Lid To Be Published.
Page generated: Mon Dec 14 16:12:10 2020

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