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Magnesium in PDB 4gdz: Crystal Structure of A DUF4251 Family Protein (BACEGG_02002) From Bacteroides Eggerthii Dsm 20697 at 1.95 A Resolution

Protein crystallography data

The structure of Crystal Structure of A DUF4251 Family Protein (BACEGG_02002) From Bacteroides Eggerthii Dsm 20697 at 1.95 A Resolution, PDB code: 4gdz was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.86 / 1.95
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.801, 125.801, 125.801, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 18.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A DUF4251 Family Protein (BACEGG_02002) From Bacteroides Eggerthii Dsm 20697 at 1.95 A Resolution (pdb code 4gdz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A DUF4251 Family Protein (BACEGG_02002) From Bacteroides Eggerthii Dsm 20697 at 1.95 A Resolution, PDB code: 4gdz:

Magnesium binding site 1 out of 1 in 4gdz

Go back to Magnesium Binding Sites List in 4gdz
Magnesium binding site 1 out of 1 in the Crystal Structure of A DUF4251 Family Protein (BACEGG_02002) From Bacteroides Eggerthii Dsm 20697 at 1.95 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A DUF4251 Family Protein (BACEGG_02002) From Bacteroides Eggerthii Dsm 20697 at 1.95 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg200

b:66.5
occ:1.00
O A:ASN172 2.2 51.1 1.0
O A:ASN174 2.3 54.9 1.0
OD1 A:ASN168 2.3 51.6 1.0
O A:PRO169 2.5 47.1 1.0
O A:HOH383 2.6 67.6 1.0
N A:PRO169 3.3 46.7 1.0
C A:ASN172 3.3 66.5 1.0
CD A:PRO169 3.4 49.5 1.0
C A:ASN174 3.5 75.2 1.0
C A:PRO169 3.5 47.9 1.0
CG A:ASN168 3.5 55.8 1.0
N A:ASN174 3.7 61.0 1.0
C A:SER173 3.7 58.5 1.0
C A:ASN168 3.7 45.2 1.0
OD1 A:ASN172 3.8 57.7 1.0
CA A:PRO169 3.8 45.3 1.0
O A:HOH301 3.9 76.4 1.0
CA A:ASN168 4.0 43.7 1.0
CA A:SER173 4.0 72.7 1.0
N A:SER173 4.0 66.3 1.0
O A:SER173 4.1 81.1 1.0
CA A:ASN174 4.1 64.2 0.5
CA A:ASN174 4.1 61.8 0.5
CB A:PRO169 4.2 48.5 1.0
N A:ASN172 4.2 50.3 1.0
CA A:ASN172 4.3 56.9 1.0
CB A:ASN168 4.4 47.6 1.0
CG A:PRO169 4.4 51.3 1.0
O A:ASN168 4.4 45.5 1.0
ND2 A:ASN168 4.5 50.2 1.0
N A:THR175 4.6 51.2 1.0
N A:ASN170 4.7 44.5 1.0
CG2 A:THR175 4.7 56.0 1.0
CG A:ASN172 4.7 53.1 1.0
O A:HOH407 4.7 62.9 1.0
CB A:ASN174 4.8 58.5 0.5
CA A:THR175 4.8 53.9 1.0
OD1 A:ASN174 4.9 63.4 0.5
CB A:ASN174 5.0 57.9 0.5

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Dec 14 16:15:39 2020

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