Magnesium in PDB 4ge0: Schizosaccharomyces Pombe Dj-1 T114P Mutant

The structure of Schizosaccharomyces Pombe Dj-1 T114P Mutant, PDB code: 4ge0 was solved by P.Madzelan, T.Labunska, M.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.51 / 1.45
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.486, 51.743, 82.749, 89.10, 89.08, 66.86
R / Rfree (%)	17.9 / 20.8

The binding sites of Magnesium atom in the Schizosaccharomyces Pombe Dj-1 T114P Mutant (pdb code 4ge0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Schizosaccharomyces Pombe Dj-1 T114P Mutant, PDB code: 4ge0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Schizosaccharomyces Pombe Dj-1 T114P Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Schizosaccharomyces Pombe Dj-1 T114P Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg202 b:32.4 occ:1.00 O C:HOH419 1.9 35.1 1.0 O D:HOH244 2.2 30.7 1.0 O D:HOH246 2.2 26.6 1.0 O D:HOH262 3.8 28.2 1.0 O C:HOH542 4.0 39.3 1.0 O C:HOH340 4.0 16.4 1.0 O C:HOH538 4.1 40.8 1.0 O D:MET190 4.1 17.8 1.0 OD1 C:ASP146 4.2 22.8 1.0 O D:HOH334 4.6 26.6 1.0 OE1 C:GLN159 4.6 18.8 1.0 OD2 C:ASP146 4.9 26.2 1.0 CG C:ASP146 5.0 23.4 1.0 O D:HOH306 5.0 36.4 1.0

Magnesium binding site 2 out of 2 in the Schizosaccharomyces Pombe Dj-1 T114P Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Schizosaccharomyces Pombe Dj-1 T114P Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg203 b:28.4 occ:1.00 O A:HOH437 1.9 36.4 1.0 O C:HOH589 1.9 29.5 1.0 O C:HOH531 2.0 33.3 1.0 O C:HOH540 2.1 35.0 1.0 O C:HOH590 2.3 37.7 1.0 OE1 C:GLU153 4.0 20.3 1.0 OE2 C:GLU153 4.2 22.3 1.0 O A:HOH433 4.2 40.5 1.0 O A:HOH235 4.3 19.3 1.0 CD C:GLU153 4.6 19.2 1.0 O C:HOH551 4.7 41.8 1.0 O A:HOH365 4.9 26.6 1.0

P.Madzelan, T.Labunska, M.A.Wilson. Influence of Peptide Dipoles and Hydrogen Bonds on Reactive Cysteine Pk(A) Values in Fission Yeast Dj-1. Febs J. V. 279 4111 2012.
ISSN: ISSN 1742-464X
PubMed: 22971103
DOI: 10.1111/FEBS.12004