Magnesium in PDB 4ge3: Schizosaccharomyces Pombe Dj-1 T114V Mutant

The structure of Schizosaccharomyces Pombe Dj-1 T114V Mutant, PDB code: 4ge3 was solved by P.Madzelan, T.Labunska, M.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	82.89 / 1.50
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.579, 52.075, 82.912, 89.01, 88.98, 66.55
R / Rfree (%)	15.8 / 18.9

The binding sites of Magnesium atom in the Schizosaccharomyces Pombe Dj-1 T114V Mutant (pdb code 4ge3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Schizosaccharomyces Pombe Dj-1 T114V Mutant, PDB code: 4ge3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Schizosaccharomyces Pombe Dj-1 T114V Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Schizosaccharomyces Pombe Dj-1 T114V Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg203 b:33.2 occ:1.00 O C:HOH421 2.0 39.5 1.0 O D:HOH244 2.1 29.1 1.0 O D:HOH246 2.2 28.4 1.0 O C:HOH563 2.3 33.7 1.0 O D:HOH261 3.8 26.9 1.0 O C:HOH533 3.9 34.5 1.0 O C:HOH340 4.0 15.5 1.0 O D:MET190 4.1 14.9 1.0 OD1 C:ASP146 4.3 21.1 1.0 O D:HOH331 4.5 29.0 1.0 OE1 C:GLN159 4.6 18.4 1.0 O D:HOH275 4.7 28.8 1.0 O D:HOH303 4.8 30.9 1.0 OD2 C:ASP146 4.9 23.9 1.0 CG C:ASP146 4.9 21.7 1.0

Magnesium binding site 2 out of 2 in the Schizosaccharomyces Pombe Dj-1 T114V Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Schizosaccharomyces Pombe Dj-1 T114V Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg204 b:31.5 occ:1.00 O C:HOH565 2.0 35.3 1.0 O C:HOH524 2.0 42.8 1.0 O A:HOH515 2.1 32.9 1.0 O A:HOH514 2.1 33.4 1.0 O C:HOH564 2.1 34.4 1.0 OE1 C:GLU153 4.1 21.0 1.0 OE2 C:GLU153 4.2 24.3 1.0 O A:HOH338 4.4 21.9 1.0 CD C:GLU153 4.6 20.7 1.0 CE C:LYS101 4.8 27.7 1.0 O C:HOH541 4.9 45.4 1.0 NZ C:LYS101 4.9 30.7 1.0 O A:HOH459 4.9 26.9 1.0

P.Madzelan, T.Labunska, M.A.Wilson. Influence of Peptide Dipoles and Hydrogen Bonds on Reactive Cysteine Pk(A) Values in Fission Yeast Dj-1. Febs J. V. 279 4111 2012.
ISSN: ISSN 1742-464X
PubMed: 22971103
DOI: 10.1111/FEBS.12004