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Magnesium in PDB 4ged: Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex

Enzymatic activity of Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex

All present enzymatic activity of Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex:
1.11.1.11;

Protein crystallography data

The structure of Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex, PDB code: 4ged was solved by V.S.Jasion, T.Doukov, S.H.Pineda, H.Li, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.99 / 1.84
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 149.750, 149.750, 36.420, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 19.7

Other elements in 4ged:

The structure of Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex also contains other interesting chemical elements:

Potassium (K) 1 atom
Iron (Fe) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex (pdb code 4ged). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex, PDB code: 4ged:

Magnesium binding site 1 out of 1 in 4ged

Go back to Magnesium Binding Sites List in 4ged
Magnesium binding site 1 out of 1 in the Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:48.0
occ:1.00
 HG A:SER72 2.3 72.0 1.0
OE2 A:GLU69 2.7 52.4 1.0
OG A:SER86 2.7 59.4 1.0
O A:GLU69 2.7 50.3 1.0
HG A:SER86 2.8 59.2 1.0
OE2 A:GLU92 2.8 62.7 1.0
OG A:SER72 2.9 71.1 1.0
O A:SER81 2.9 57.5 1.0
CD A:GLU69 3.1 65.9 1.0
HA A:PRO82 3.1 48.9 1.0
OE1 A:GLU69 3.2 55.1 1.0
HA A:GLU69 3.4 43.7 1.0
O A:GLY80 3.5 61.5 1.0
OE1 A:GLU92 3.6 64.8 1.0
CD A:GLU92 3.6 76.9 1.0
C A:GLU69 3.7 49.1 1.0
HB3 A:SER72 3.7 59.6 1.0
H A:SER86 3.8 51.3 1.0
C A:SER81 3.8 57.9 1.0
CB A:SER72 3.9 59.7 1.0
HG A:SER84 4.0 56.4 1.0
CA A:GLU69 4.0 43.0 1.0
CA A:PRO82 4.1 49.8 1.0
CB A:SER86 4.1 55.0 1.0
HB3 A:SER81 4.1 62.0 1.0
CG A:GLU69 4.2 52.2 1.0
H A:ASN83 4.2 48.3 1.0
N A:PRO82 4.3 51.3 1.0
HG3 A:GLU69 4.3 52.1 1.0
HB2 A:SER72 4.3 60.4 1.0
H A:SER84 4.3 50.9 1.0
H A:SER72 4.3 53.9 1.0
H A:MET87 4.4 50.8 1.0
HB3 A:SER86 4.4 55.5 1.0
N A:SER86 4.6 52.1 1.0
HB2 A:MET87 4.6 50.5 1.0
C A:GLY80 4.6 61.8 1.0
OG A:SER84 4.7 57.5 1.0
N A:ASN83 4.7 49.3 1.0
CB A:GLU69 4.7 44.5 1.0
HB2 A:SER86 4.7 55.8 1.0
C A:PRO82 4.7 53.1 1.0
O A:HIS68 4.7 45.8 1.0
O A:HOH510 4.7 42.0 1.0
CA A:SER86 4.8 52.5 1.0
N A:MET87 4.8 51.6 1.0
CA A:SER81 4.8 57.8 1.0
N A:ALA70 4.9 46.4 1.0
CB A:SER81 4.9 63.0 1.0
HA A:ALA70 4.9 48.1 1.0
C A:SER86 5.0 55.6 1.0

Reference:

V.S.Jasion, T.Doukov, S.H.Pineda, H.Li, T.L.Poulos. Crystal Structure of the Leishmania Major Peroxidase-Cytochrome C Complex. Proc.Natl.Acad.Sci.Usa V. 109 18390 2012.
ISSN: ISSN 0027-8424
PubMed: 23100535
DOI: 10.1073/PNAS.1213295109
Page generated: Mon Dec 14 16:19:10 2020

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