Magnesium in PDB 4gok: The Crystal Structure of ARL2GPPNHP in Complex with UNC119A

The structure of The Crystal Structure of ARL2GPPNHP in Complex with UNC119A, PDB code: 4gok was solved by S.Ismail, Y.Xiang-Chen, M.Miertzschke, I.Vetter, C.Koerner, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.85 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.450, 61.080, 143.620, 90.00, 101.33, 90.00
R / Rfree (%)	24.5 / 29.7

The binding sites of Magnesium atom in the The Crystal Structure of ARL2GPPNHP in Complex with UNC119A (pdb code 4gok). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of ARL2GPPNHP in Complex with UNC119A, PDB code: 4gok:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of ARL2GPPNHP in Complex with UNC119A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of ARL2GPPNHP in Complex with UNC119A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:31.2 occ:1.00 OG1 B:THR30 1.9 14.7 1.0 O1G B:GNP201 2.0 19.6 1.0 O2B B:GNP201 2.2 15.1 1.0 O B:HOH302 2.2 7.1 1.0 O B:HOH301 2.3 15.5 1.0 OG1 B:THR47 2.4 20.0 1.0 CB B:THR30 3.2 13.7 1.0 CB B:THR47 3.2 21.8 1.0 PG B:GNP201 3.2 17.9 1.0 PB B:GNP201 3.2 16.7 1.0 N3B B:GNP201 3.3 19.2 1.0 OD1 B:ASP66 3.6 18.6 1.0 OD2 B:ASP66 3.7 18.7 1.0 N B:THR30 3.8 15.4 1.0 O3G B:GNP201 3.9 19.5 1.0 N B:THR47 4.0 24.5 1.0 CA B:THR30 4.0 14.2 1.0 CG B:ASP66 4.1 19.6 1.0 O1B B:GNP201 4.2 18.8 1.0 O1A B:GNP201 4.2 16.8 1.0 CG2 B:THR30 4.2 12.9 1.0 CA B:THR47 4.2 21.9 1.0 CG2 B:THR47 4.2 19.2 1.0 O2G B:GNP201 4.3 19.3 1.0 O3A B:GNP201 4.4 18.1 1.0 ND2 B:ASN51 4.5 9.2 1.0 O B:SER45 4.6 26.8 1.0 CE B:LYS29 4.7 14.6 1.0 PA B:GNP201 4.7 19.5 1.0 CB B:LYS29 4.7 15.1 1.0 C B:LYS29 4.9 14.7 1.0 O2A B:GNP201 4.9 18.0 1.0 NZ B:LYS29 4.9 15.1 1.0 CA B:GLY68 5.0 12.7 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of ARL2GPPNHP in Complex with UNC119A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of ARL2GPPNHP in Complex with UNC119A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:13.3 occ:1.00 OG1 A:THR30 1.6 20.7 1.0 O2B A:GNP201 2.1 18.5 1.0 OG1 A:THR47 2.3 19.0 1.0 O A:HOH302 2.3 8.5 1.0 O A:HOH301 2.3 11.5 1.0 O1G A:GNP201 2.3 20.9 1.0 CB A:THR30 2.9 20.9 1.0 CB A:THR47 3.1 19.5 1.0 OD2 A:ASP66 3.4 31.2 1.0 PB A:GNP201 3.5 19.1 1.0 PG A:GNP201 3.6 21.3 1.0 OD1 A:ASP66 3.6 27.5 1.0 N A:THR30 3.7 17.5 1.0 N3B A:GNP201 3.8 19.5 1.0 CA A:THR30 3.8 19.5 1.0 CG A:ASP66 3.9 29.5 1.0 CG2 A:THR30 3.9 17.1 1.0 N A:THR47 4.0 22.4 1.0 O3G A:GNP201 4.1 18.8 1.0 CG2 A:THR47 4.1 17.1 1.0 CA A:THR47 4.2 21.8 1.0 ND2 A:ASN51 4.2 15.7 1.0 O1B A:GNP201 4.3 18.1 1.0 O1A A:GNP201 4.4 19.5 1.0 O A:SER45 4.5 20.3 1.0 O3A A:GNP201 4.6 19.6 1.0 O2A A:GNP201 4.8 16.4 1.0 PA A:GNP201 4.8 20.1 1.0 O2G A:GNP201 4.8 18.2 1.0 C A:LYS29 4.8 17.8 1.0 CB A:LYS29 4.9 18.8 1.0 CE A:LYS29 5.0 19.4 1.0

S.A.Ismail, Y.X.Chen, M.Miertzschke, I.R.Vetter, C.Koerner, A.Wittinghofer. Structural Basis For ARL3-Specific Release of Myristoylated Ciliary Cargo From UNC119. Embo J. V. 31 4085 2012.
ISSN: ISSN 0261-4189
PubMed: 22960633
DOI: 10.1038/EMBOJ.2012.257