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Magnesium in PDB 4gt8: Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp

Enzymatic activity of Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp

All present enzymatic activity of Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp:
2.7.13.3;

Protein crystallography data

The structure of Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp, PDB code: 4gt8 was solved by P.G.Leonard, J.Valverde, A.M.Stock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 1.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 31.192, 47.233, 89.398, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 19.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp (pdb code 4gt8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp, PDB code: 4gt8:

Magnesium binding site 1 out of 1 in 4gt8

Go back to Magnesium Binding Sites List in 4gt8
Magnesium binding site 1 out of 1 in the Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Catalytic and Atp-Binding Domain From Vras in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:19.4
occ:1.00
O2A A:ADP401 1.9 21.7 1.0
OE2 A:GLU259 2.0 22.6 1.0
OD1 A:ASN263 2.0 19.3 1.0
O3B A:ADP401 2.1 23.2 1.0
O A:HOH574 2.1 21.4 1.0
O A:HOH576 2.1 22.2 1.0
CG A:ASN263 3.0 18.0 1.0
PB A:ADP401 3.2 27.1 1.0
CD A:GLU259 3.2 19.7 1.0
PA A:ADP401 3.2 24.4 1.0
ND2 A:ASN263 3.3 19.4 1.0
O3A A:ADP401 3.5 26.1 1.0
OE1 A:GLU259 3.7 22.6 1.0
O1B A:ADP401 3.7 24.5 1.0
O A:HOH579 4.2 23.7 1.0
CA A:GLY306 4.2 20.0 1.0
O5' A:ADP401 4.2 22.9 1.0
O1A A:ADP401 4.2 27.1 1.0
O A:HOH581 4.4 24.6 1.0
CB A:ASN263 4.4 15.9 1.0
CG A:GLU259 4.4 21.9 1.0
NE2 A:HIS267 4.4 26.1 1.0
O2B A:ADP401 4.5 32.6 1.0
NH1 A:ARG266 4.5 36.3 1.0
CA A:ASN263 4.7 18.2 1.0
O A:HOH605 4.8 38.6 1.0
OG A:SER262 4.8 27.1 1.0
O A:GLU259 4.8 18.1 1.0
N A:GLY306 4.9 20.0 1.0
N A:ASN263 4.9 20.0 1.0
CD2 A:HIS267 5.0 24.4 1.0

Reference:

P.G.Leonard, J.Valverde, A.M.Stock. Structure of the Staphylococcus Aureus Vras Catalytic and Atp-Binding Domain To Be Published.
Page generated: Mon Dec 14 16:38:31 2020

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