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Magnesium in PDB 4gwx: Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation

Enzymatic activity of Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation

All present enzymatic activity of Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation:
3.1.3.11;

Protein crystallography data

The structure of Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation, PDB code: 4gwx was solved by Y.Gao, R.B.Honzatko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.74 / 2.35
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.971, 83.272, 165.772, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 26.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation (pdb code 4gwx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation, PDB code: 4gwx:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4gwx

Go back to Magnesium Binding Sites List in 4gwx
Magnesium binding site 1 out of 3 in the Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:7.6
occ:1.00
 O A:HOH514 1.9 21.1 1.0
OE1 A:GLU97 1.9 31.0 1.0
OD2 A:ASP118 2.1 17.5 1.0
O A:LEU120 2.2 27.2 1.0
O4 A:PO4402 2.2 36.9 1.0
O2 A:PO4402 2.3 39.5 1.0
P A:PO4402 2.8 36.4 1.0
CD A:GLU97 3.1 33.7 1.0
CG A:ASP118 3.1 22.8 1.0
C A:LEU120 3.1 26.4 1.0
OD1 A:ASP118 3.4 29.8 1.0
OE2 A:GLU97 3.6 33.4 1.0
O3 A:PO4402 3.8 35.3 1.0
CA A:ASP121 3.8 27.2 1.0
MG A:MG406 3.8 14.6 1.0
N A:ASP121 3.8 26.9 1.0
MG A:MG405 3.9 12.0 1.0
N A:LEU120 4.0 24.8 1.0
OD2 A:ASP74 4.0 32.1 1.0
O1 A:PO4402 4.0 35.1 1.0
CA A:LEU120 4.1 25.5 1.0
OE2 A:GLU98 4.2 33.2 1.0
CG A:GLU97 4.4 30.8 1.0
CB A:ASP118 4.5 21.7 1.0
CB A:ASP121 4.6 26.7 1.0
CD A:PRO119 4.6 22.2 1.0
CB A:LEU120 4.7 24.4 1.0
CB A:GLU97 4.7 29.6 1.0
N A:PRO119 4.8 22.9 1.0
C A:ASP118 4.8 23.1 1.0
CA A:ASP118 4.8 22.1 1.0
C A:ASP121 4.9 27.5 1.0
NH2 A:ARG276 4.9 36.9 1.0

Magnesium binding site 2 out of 3 in 4gwx

Go back to Magnesium Binding Sites List in 4gwx
Magnesium binding site 2 out of 3 in the Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg405

b:12.0
occ:1.00
 O2 A:PO4402 1.9 39.5 1.0
OE1 A:GLU280 2.0 30.7 1.0
OD1 A:ASP118 2.0 29.8 1.0
OD1 A:ASP121 2.7 23.2 1.0
CB A:ASP121 3.1 26.7 1.0
CD A:GLU280 3.1 26.6 1.0
CG A:ASP118 3.2 22.8 1.0
P A:PO4402 3.2 36.4 1.0
CG A:ASP121 3.3 26.5 1.0
CA A:ASP121 3.5 27.2 1.0
C1 A:F6P401 3.6 25.4 1.0
CG A:GLU280 3.6 22.9 1.0
NH2 A:ARG276 3.6 36.9 1.0
O1 A:PO4402 3.7 35.1 1.0
OD2 A:ASP118 3.7 17.5 1.0
O3 A:PO4402 3.8 35.3 1.0
MG A:MG404 3.9 7.6 1.0
OE2 A:GLU280 4.2 27.1 1.0
N A:GLY122 4.3 27.0 1.0
O3 A:F6P401 4.3 14.7 1.0
O4 A:PO4402 4.4 36.9 1.0
OE1 A:GLU97 4.4 31.0 1.0
O1 A:F6P401 4.4 33.2 1.0
CB A:ASP118 4.4 21.7 1.0
C A:ASP121 4.4 27.5 1.0
OD2 A:ASP121 4.5 27.8 1.0
C2 A:F6P401 4.7 19.9 1.0
N A:ASP121 4.7 26.9 1.0
C3 A:F6P401 4.7 16.9 1.0
CD1 A:ILE135 4.8 18.9 1.0
O A:LEU120 4.8 27.2 1.0
CZ A:ARG276 4.9 34.4 1.0
CD A:GLU97 5.0 33.7 1.0
CB A:GLU280 5.0 21.0 1.0

Magnesium binding site 3 out of 3 in 4gwx

Go back to Magnesium Binding Sites List in 4gwx
Magnesium binding site 3 out of 3 in the Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Product Complexes of Porcine Liver Fructose-1,6- Bisphosphatase with Restrained Subunit Pair Rotation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg406

b:14.6
occ:1.00
 OE2 A:GLU97 2.2 33.4 1.0
OD2 A:ASP68 2.2 48.1 1.0
O3 A:PO4402 2.3 35.3 1.0
O A:HOH519 2.3 34.8 1.0
O4 A:PO4402 2.4 36.9 1.0
P A:PO4402 2.9 36.4 1.0
CG A:ASP68 3.0 48.1 1.0
CD A:GLU97 3.1 33.7 1.0
CB A:ASP68 3.3 48.3 1.0
OE1 A:GLU97 3.5 31.0 1.0
MG A:MG404 3.8 7.6 1.0
ND2 A:ASN64 3.9 50.1 1.0
O2 A:PO4402 3.9 39.5 1.0
O1 A:PO4402 3.9 35.1 1.0
OD1 A:ASP68 4.1 47.2 1.0
OE2 A:GLU98 4.2 33.2 1.0
NH1 A:ARG276 4.2 30.6 1.0
NH2 A:ARG276 4.3 36.9 1.0
O A:HOH514 4.4 21.1 1.0
OG A:SER123 4.4 34.3 1.0
CG A:GLU97 4.4 30.8 1.0
O A:HOH540 4.5 50.9 1.0
CB A:SER123 4.7 31.5 1.0
CZ A:ARG276 4.8 34.4 1.0
CA A:ASP68 4.8 48.2 1.0
OD1 A:ASP74 4.8 34.7 1.0
OD2 A:ASP74 4.9 32.1 1.0
CG A:ASN64 4.9 53.7 1.0

Reference:

Y.Gao, L.Shen, R.B.Honzatko. Functional Importance of Subunit Pair Rotation in Regulation of Tetrameric Mammalian Fructose-1,6-Bisphosphatase To Be Published.
Page generated: Fri Aug 16 16:03:42 2024

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