Atomistry » Magnesium » PDB 4gnr-4gyq » 4gyp
Atomistry »
  Magnesium »
    PDB 4gnr-4gyq »
      4gyp »

Magnesium in PDB 4gyp: Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058)

Enzymatic activity of Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058)

All present enzymatic activity of Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058):
4.2.1.40;

Protein crystallography data

The structure of Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058), PDB code: 4gyp was solved by T.Lukk, S.Ghasempur, H.J.Imker, J.A.Gerlt, S.K.Nair, Enzyme Functioninitiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.96 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 155.470, 113.020, 128.590, 90.00, 105.89, 90.00
R / Rfree (%) 14.9 / 18.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058) (pdb code 4gyp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058), PDB code: 4gyp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4gyp

Go back to Magnesium Binding Sites List in 4gyp
Magnesium binding site 1 out of 2 in the Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:16.4
occ:1.00
OD1 A:ASN289 2.2 12.2 1.0
OE2 A:GLU260 2.3 14.2 1.0
OD1 A:ASP235 2.5 10.2 1.0
OD2 A:ASP261 2.6 9.5 1.0
OD2 A:ASP235 2.8 8.8 1.0
CG A:ASP235 2.9 12.7 1.0
CD A:GLU260 3.1 14.0 1.0
O A:HOH642 3.2 11.9 1.0
CG A:GLU260 3.3 11.1 1.0
ND2 A:ASN237 3.4 6.3 1.0
CG A:ASN289 3.4 13.2 1.0
CG A:ASP261 3.5 9.2 1.0
CB A:ASP261 3.8 10.1 1.0
O A:HOH629 3.8 13.1 1.0
N A:ASN289 4.1 11.6 1.0
CG A:ASN237 4.1 11.1 1.0
OE1 A:GLU260 4.2 14.7 1.0
CB A:ASN289 4.2 6.0 1.0
CB A:ASP235 4.2 5.3 1.0
ND2 A:ASN289 4.4 6.1 1.0
CA A:ASN237 4.5 6.2 1.0
CB A:GLU260 4.6 8.2 1.0
OD1 A:ASN237 4.7 7.4 1.0
SD A:MET290 4.7 10.6 1.0
CG A:MET290 4.7 15.3 1.0
OD1 A:ASP261 4.7 6.6 1.0
CA A:ASN289 4.7 12.5 1.0
N A:ASN237 4.7 6.1 1.0
NZ A:LYS207 4.8 15.2 1.0
N A:ASP261 4.9 6.6 1.0
C A:GLU260 4.9 6.7 1.0
CB A:ASN237 4.9 7.9 1.0
C A:THR288 5.0 11.8 1.0
CA A:ASP261 5.0 14.2 1.0

Magnesium binding site 2 out of 2 in 4gyp

Go back to Magnesium Binding Sites List in 4gyp
Magnesium binding site 2 out of 2 in the Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Heterotetrameric Complex of Glucd and Glucdrp From E. Coli K-12 MG1655 (Efi Target Efi-506058) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:19.2
occ:1.00
OD1 B:ASN289 2.2 13.1 1.0
OE2 B:GLU260 2.4 16.8 1.0
OD2 B:ASP261 2.4 11.9 1.0
OD1 B:ASP235 2.5 10.1 1.0
OD2 B:ASP235 2.8 12.5 1.0
CG B:ASP235 2.9 10.4 1.0
CD B:GLU260 3.1 14.6 1.0
ND2 B:ASN237 3.3 11.7 1.0
CG B:GLU260 3.3 10.7 1.0
CG B:ASP261 3.4 11.1 1.0
CG B:ASN289 3.4 8.4 1.0
O B:HOH677 3.6 25.5 1.0
CB B:ASP261 3.7 10.3 1.0
O B:HOH676 3.9 13.7 1.0
N B:ASN289 4.0 11.6 1.0
CG B:ASN237 4.1 13.3 1.0
CB B:ASN289 4.1 7.4 1.0
OE1 B:GLU260 4.2 17.4 1.0
CB B:ASP235 4.3 8.0 1.0
ND2 B:ASN289 4.4 7.5 1.0
CA B:ASN237 4.5 8.7 1.0
OD1 B:ASP261 4.5 8.0 1.0
CB B:GLU260 4.6 11.4 1.0
SD B:MET290 4.6 13.0 1.0
CA B:ASN289 4.6 8.9 1.0
CG B:MET290 4.6 14.7 1.0
N B:ASN237 4.7 7.8 1.0
OD1 B:ASN237 4.7 8.5 1.0
N B:ASP261 4.8 9.6 1.0
C B:GLU260 4.8 13.2 1.0
C B:THR288 4.9 12.4 1.0
CB B:ASN237 4.9 10.2 1.0
CA B:ASP261 4.9 10.8 1.0
O B:GLU260 4.9 12.1 1.0
NZ B:LYS207 5.0 17.7 1.0

Reference:

T.Lukk, S.Ghasempur, H.J.Imker, S.K.Nair, J.A.Gerlt. Glucarate Dehydratase and Its Related Protein From Escherichia Coli Form A Heterotetrameric Complex. To Be Published.
Page generated: Fri Aug 16 16:05:49 2024

Last articles

Ca in 5TA0
Ca in 5TA1
Ca in 5T9Q
Ca in 5T9K
Ca in 5T9I
Ca in 5T8D
Ca in 5T9C
Ca in 5T9B
Ca in 5T91
Ca in 5T77
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy