Atomistry » Magnesium » PDB 4gyi-4h99 » 4gzm
Atomistry »
  Magnesium »
    PDB 4gyi-4h99 »
      4gzm »

Magnesium in PDB 4gzm: Crystal Structure of RAC1 F28L Mutant

Enzymatic activity of Crystal Structure of RAC1 F28L Mutant

All present enzymatic activity of Crystal Structure of RAC1 F28L Mutant:
3.6.5.2;

Protein crystallography data

The structure of Crystal Structure of RAC1 F28L Mutant, PDB code: 4gzm was solved by B.H.Ha, T.J.Boggon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.82 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.094, 98.807, 51.994, 90.00, 90.21, 90.00
R / Rfree (%) 25.4 / 28.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of RAC1 F28L Mutant (pdb code 4gzm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of RAC1 F28L Mutant, PDB code: 4gzm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4gzm

Go back to Magnesium Binding Sites List in 4gzm
Magnesium binding site 1 out of 2 in the Crystal Structure of RAC1 F28L Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of RAC1 F28L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:74.2
occ:1.00
O3G A:GSP1000 1.9 0.5 1.0
OG1 A:THR17 2.1 96.8 1.0
OG1 A:THR35 2.2 0.2 1.0
O2B A:GSP1000 2.3 0.9 1.0
CB A:THR35 3.1 0.2 1.0
PG A:GSP1000 3.1 0.9 1.0
O3B A:GSP1000 3.1 0.7 1.0
PB A:GSP1000 3.2 0.2 1.0
OD1 A:ASP57 3.3 0.8 1.0
CB A:THR17 3.5 1.0 1.0
OD2 A:ASP57 3.6 0.8 1.0
N A:THR17 3.8 0.1 1.0
CG A:ASP57 3.9 0.4 1.0
O A:THR58 3.9 0.0 1.0
N A:THR35 4.0 0.3 1.0
CG2 A:THR35 4.1 0.6 1.0
CA A:THR35 4.1 1.0 1.0
O2G A:GSP1000 4.1 0.4 1.0
CA A:THR17 4.1 0.9 1.0
O1B A:GSP1000 4.2 0.7 1.0
O1A A:GSP1000 4.3 0.2 1.0
CG2 A:THR17 4.4 0.3 1.0
CB A:LYS16 4.5 90.9 1.0
O3A A:GSP1000 4.5 0.6 1.0
S1G A:GSP1000 4.5 0.9 1.0
CE A:LYS16 4.6 1.0 1.0
PA A:GSP1000 4.7 0.4 1.0
O2A A:GSP1000 4.8 0.9 1.0
C A:LYS16 4.8 97.3 1.0
NZ A:LYS16 4.9 0.2 1.0

Magnesium binding site 2 out of 2 in 4gzm

Go back to Magnesium Binding Sites List in 4gzm
Magnesium binding site 2 out of 2 in the Crystal Structure of RAC1 F28L Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of RAC1 F28L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1001

b:74.3
occ:1.00
OG1 B:THR17 2.1 0.2 1.0
OG1 B:THR35 2.1 0.9 1.0
O3G B:GSP1000 2.4 0.1 1.0
O2B B:GSP1000 2.6 0.1 1.0
O2G B:GSP1000 2.7 0.0 1.0
CB B:THR35 2.9 0.3 1.0
OD1 B:ASP57 3.0 0.2 1.0
PG B:GSP1000 3.0 0.9 1.0
OD2 B:ASP57 3.2 0.4 1.0
CG B:ASP57 3.5 0.5 1.0
CB B:THR17 3.5 0.5 1.0
O B:THR58 3.7 0.4 1.0
PB B:GSP1000 3.7 0.2 1.0
O3B B:GSP1000 3.8 0.7 1.0
N B:THR17 3.8 1.0 1.0
CG2 B:THR35 3.9 0.2 1.0
N B:THR35 4.1 0.3 1.0
CA B:THR17 4.1 0.1 1.0
CA B:THR35 4.1 0.1 1.0
CG2 B:THR17 4.4 0.5 1.0
CB B:LYS16 4.4 96.5 1.0
CE B:LYS16 4.5 0.4 1.0
O1A B:GSP1000 4.6 0.6 1.0
O1B B:GSP1000 4.7 0.4 1.0
S1G B:GSP1000 4.7 0.5 1.0
C B:LYS16 4.7 0.1 1.0
NZ B:LYS16 4.9 0.2 1.0
C B:THR58 4.9 0.9 1.0
O3A B:GSP1000 4.9 0.1 1.0

Reference:

M.J.Davis, B.H.Ha, E.C.Holman, R.Halaban, J.Schlessinger, T.J.Boggon. RAC1P29S Is A Spontaneously Activating Cancer-Associated Gtpase. Proc.Natl.Acad.Sci.Usa V. 110 912 2013.
ISSN: ISSN 0027-8424
PubMed: 23284172
DOI: 10.1073/PNAS.1220895110
Page generated: Mon Dec 14 17:01:29 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy