Atomistry » Magnesium » PDB 4gyi-4h99 » 4gzz
Atomistry »
  Magnesium »
    PDB 4gyi-4h99 »
      4gzz »

Magnesium in PDB 4gzz: Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes

Enzymatic activity of Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes

All present enzymatic activity of Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes:
2.7.7.6;

Protein crystallography data

The structure of Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes, PDB code: 4gzz was solved by A.Weixlbaumer, K.Leon, R.Landick, S.A.Darst, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.79 / 4.29
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 286.549, 286.549, 199.411, 90.00, 90.00, 120.00
R / Rfree (%) 23.5 / 28.5

Other elements in 4gzz:

The structure of Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes (pdb code 4gzz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes, PDB code: 4gzz:

Magnesium binding site 1 out of 1 in 4gzz

Go back to Magnesium Binding Sites List in 4gzz
Magnesium binding site 1 out of 1 in the Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structures of Bacterial Rna Polymerase Paused Elongation Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1603

b:70.0
occ:1.00
O3' R:U29 2.2 0.2 1.0
OD1 D:ASP739 2.3 75.5 1.0
OD2 D:ASP739 2.7 75.1 1.0
CG D:ASP739 2.9 75.4 1.0
OD1 D:ASP743 2.9 0.6 1.0
OD1 D:ASP741 3.0 64.8 1.0
OD2 D:ASP743 3.4 0.6 1.0
C3' R:U29 3.4 0.1 1.0
OD2 D:ASP741 3.5 64.3 1.0
CG D:ASP743 3.5 0.8 1.0
CG D:ASP741 3.6 64.7 1.0
C4' R:U29 3.9 1.0 1.0
C5' R:U29 3.9 1.0 1.0
CB D:ASP739 4.4 75.6 1.0
C2' R:U29 4.6 0.1 1.0
NH2 D:ARG704 4.6 0.6 1.0
O5' R:U29 4.7 0.9 1.0
O D:ASP739 4.7 49.5 1.0
O2' R:U29 4.7 0.1 1.0
OP1 R:U29 4.9 1.0 1.0
N D:ASP739 4.9 49.2 1.0

Reference:

A.Weixlbaumer, K.Leon, R.Landick, S.A.Darst. Structural Basis of Transcriptional Pausing in Bacteria. Cell(Cambridge,Mass.) V. 152 431 2013.
ISSN: ISSN 0092-8674
PubMed: 23374340
DOI: 10.1016/J.CELL.2012.12.020
Page generated: Mon Dec 14 17:01:34 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy