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Magnesium in PDB 4h46: Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase

Enzymatic activity of Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase

All present enzymatic activity of Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase:
3.1.3.11;

Protein crystallography data

The structure of Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase, PDB code: 4h46 was solved by Y.Gao, R.B.Honzatko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.30 / 2.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.561, 78.673, 164.928, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase (pdb code 4h46). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase, PDB code: 4h46:

Magnesium binding site 1 out of 1 in 4h46

Go back to Magnesium Binding Sites List in 4h46
Magnesium binding site 1 out of 1 in the Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Amp Complexes of Nem Modified Porcine Liver Fructose-1,6-Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:31.9
occ:1.00
O2 A:PO4403 1.8 90.0 1.0
OE2 A:GLU280 1.8 26.8 1.0
OD2 A:ASP118 2.2 24.0 1.0
O1 A:PO4403 2.2 88.5 1.0
OD2 A:ASP121 2.3 23.8 1.0
P A:PO4403 2.4 90.8 1.0
OE2 A:GLU97 2.8 31.9 1.0
CD A:GLU280 3.0 24.0 1.0
O3 A:PO4403 3.1 89.1 1.0
O1 A:F6P401 3.2 29.4 1.0
CG A:ASP121 3.3 27.5 1.0
CG A:ASP118 3.3 18.1 1.0
CB A:ASP121 3.6 26.6 1.0
O4 A:PO4403 3.7 91.7 1.0
CG A:GLU280 3.7 21.6 1.0
CD A:GLU97 3.8 28.4 1.0
OD1 A:ASP118 3.8 21.1 1.0
OE1 A:GLU280 4.0 28.8 1.0
OE1 A:GLU97 4.0 32.6 1.0
CA A:ASP121 4.2 25.7 1.0
C1 A:F6P401 4.3 20.2 1.0
OD1 A:ASP121 4.4 30.9 1.0
CB A:ASP118 4.4 18.2 1.0
O3 A:F6P401 4.9 21.1 1.0
CB A:GLU280 5.0 19.6 1.0
CD1 A:ILE135 5.0 18.0 1.0

Reference:

Y.Gao, R.B.Honzatko. Fluorescent 2',3'-O-(2,4,6-Trinitrophenyl) (Tnp)-Amp Is An Active Site Inhibitor For Porcine Liver Fructose-1,6-Bisphosphatase Rather Than Allosteric Inhibitor To Be Published.
Page generated: Mon Dec 14 17:10:20 2020

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