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Magnesium in PDB 4h5v: HSC70 Nbd with Mg

Protein crystallography data

The structure of HSC70 Nbd with Mg, PDB code: 4h5v was solved by B.Stec, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.08 / 1.75
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.741, 102.175, 54.524, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.5

Other elements in 4h5v:

The structure of HSC70 Nbd with Mg also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the HSC70 Nbd with Mg (pdb code 4h5v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the HSC70 Nbd with Mg, PDB code: 4h5v:

Magnesium binding site 1 out of 1 in 4h5v

Go back to Magnesium Binding Sites List in 4h5v
Magnesium binding site 1 out of 1 in the HSC70 Nbd with Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of HSC70 Nbd with Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:28.8
occ:1.00
O2 A:SO4401 2.0 26.3 1.0
O A:HOH501 2.1 26.2 1.0
O A:HOH503 2.1 26.0 1.0
O A:HOH504 2.2 28.0 1.0
O A:HOH505 2.3 26.3 1.0
O A:HOH502 2.3 27.8 1.0
S A:SO4401 3.2 28.0 1.0
O3 A:SO4401 3.4 24.5 1.0
O A:HOH645 4.0 31.1 1.0
O1 A:SO4401 4.0 27.4 1.0
O A:HOH636 4.1 29.0 1.0
OD1 A:ASP199 4.1 27.3 1.0
OE1 A:GLU175 4.1 27.5 1.0
OD2 A:ASP199 4.2 28.4 1.0
CL A:CL403 4.2 45.3 1.0
OD2 A:ASP10 4.3 26.8 1.0
O4 A:SO4401 4.4 25.6 1.0
OD1 A:ASP10 4.5 24.3 1.0
CG A:ASP199 4.6 28.6 1.0
CD A:GLU175 4.7 28.6 1.0
CG A:ASP10 4.9 25.4 1.0
O A:HOH534 5.0 30.2 1.0
CG1 A:VAL337 5.0 25.9 1.0

Reference:

Z.Ziming, J.Cellitti, P.Teriete, M.Pellecchia, B.Stec. New Crystal Structures of Hsc-70 Atp Binding Domain Confirm the Role of Individual Binding Pockets and Suggests A New Method of Inhibition To Be Published.
Page generated: Mon Dec 14 17:15:28 2020

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