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Magnesium in PDB 4h9d: Crystal Structure of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target GMR87

Protein crystallography data

The structure of Crystal Structure of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target GMR87, PDB code: 4h9d was solved by A.Kuzin, Y.Chen, J.Seetharaman, F.Fang, R.Xiao, K.Cunningham, L.Ma, L.Owens, C.X.Chen, J.K.Everett, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.10 / 2.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 40.674, 83.385, 225.116, 90.00, 90.00, 90.00
R / Rfree (%) 23.3 / 25.1

Other elements in 4h9d:

The structure of Crystal Structure of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target GMR87 also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target GMR87 (pdb code 4h9d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target GMR87, PDB code: 4h9d:

Magnesium binding site 1 out of 1 in 4h9d

Go back to Magnesium Binding Sites List in 4h9d
Magnesium binding site 1 out of 1 in the Crystal Structure of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target GMR87


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target GMR87 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:78.8
occ:1.00
O B:ALA34 2.6 67.3 1.0
O A:LYS81 2.9 67.7 1.0
O B:ARG35 3.3 70.8 1.0
C B:ARG35 3.7 70.0 1.0
C B:ALA34 3.8 61.2 1.0
C A:LYS81 4.0 64.7 1.0
CD B:PRO47 4.0 97.1 1.0
O B:PHE45 4.1 53.8 1.0
CG B:PRO47 4.2 97.9 1.0
N B:GLY36 4.2 49.5 1.0
CA B:GLY36 4.3 44.5 1.0
CA B:ARG35 4.4 70.2 1.0
CA A:LYS81 4.5 62.6 1.0
N B:ARG35 4.6 70.4 1.0
CG2 B:ILE44 4.7 61.9 1.0
O B:ILE33 4.8 54.2 1.0
CB A:LYS81 4.8 67.2 1.0
CA B:ALA34 4.8 60.0 1.0
N B:PRO47 4.9 75.2 1.0
CG A:LYS81 5.0 68.3 1.0

Reference:

A.Kuzin, Y.Chen, J.Seetharaman, F.Fang, R.Xiao, K.Cunningham, L.Ma, L.Owens, C.X.Chen, J.K.Everett, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong. Northeast Structural Genomics Consortium Target GMR87 To Be Published.
Page generated: Mon Dec 14 17:20:47 2020

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