Magnesium in PDB 4hac: Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei

All present enzymatic activity of Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei:
2.7.1.36;

The structure of Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei, PDB code: 4hac was solved by N.Zhuang, K.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.93 / 1.92
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	97.295, 135.359, 45.867, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 26.3

The binding sites of Magnesium atom in the Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei (pdb code 4hac). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei, PDB code: 4hac:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:38.4 occ:1.00 N A:TYR61 3.3 41.5 1.0 N A:VAL62 3.4 40.3 1.0 C A:HIS59 3.5 46.2 1.0 CA A:HIS59 3.6 47.5 1.0 N A:PRO60 3.7 45.6 1.0 CD A:PRO60 3.7 45.4 1.0 CB A:TYR61 3.7 40.1 1.0 CG2 A:VAL62 3.8 39.0 1.0 CA A:TYR61 3.8 40.7 1.0 CB A:HIS59 3.9 46.5 1.0 O A:HIS59 4.0 45.9 1.0 C A:TYR61 4.1 40.6 1.0 CD2 A:TYR61 4.2 45.4 1.0 C A:PRO60 4.2 44.0 1.0 CD2 A:HIS59 4.3 45.9 1.0 CB A:VAL62 4.3 39.4 1.0 CG A:PRO60 4.3 45.0 1.0 CG2 A:VAL98 4.5 39.4 1.0 CG A:TYR61 4.5 42.4 1.0 CA A:VAL62 4.5 39.8 1.0 CG A:HIS59 4.5 47.8 1.0 CA A:PRO60 4.5 44.8 1.0 CG1 A:VAL98 4.7 38.2 1.0 O A:LYS58 4.8 51.5 1.0 N A:HIS59 4.9 49.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Mevalonate Kinase From An Archaeon Methanosarcina Mazei within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:30.4 occ:1.00 O B:HOH738 3.0 31.5 1.0 O B:HOH757 3.2 36.9 1.0 N B:TYR61 3.3 33.4 1.0 N B:VAL62 3.5 31.8 1.0 C B:HIS59 3.5 36.0 1.0 CG2 B:VAL62 3.6 31.2 1.0 N B:PRO60 3.7 35.9 1.0 CB B:TYR61 3.7 31.0 1.0 CA B:HIS59 3.7 37.4 1.0 O B:HIS59 3.9 37.3 1.0 CD B:PRO60 3.9 37.1 1.0 CA B:TYR61 3.9 32.7 1.0 CB B:HIS59 4.2 35.8 1.0 CD2 B:HIS59 4.2 31.2 1.0 CD1 B:TYR61 4.2 31.2 1.0 C B:TYR61 4.2 32.2 1.0 CB B:VAL62 4.2 31.5 1.0 C B:PRO60 4.3 34.7 1.0 CG B:TYR61 4.4 34.8 1.0 CA B:VAL62 4.5 31.6 1.0 CA B:PRO60 4.5 35.0 1.0 CG B:PRO60 4.5 36.7 1.0 CG B:HIS59 4.5 31.9 1.0 CG2 B:VAL98 4.7 30.3 1.0 CG1 B:VAL98 4.7 31.1 1.0 O B:LYS58 4.8 40.3 1.0 O B:HOH729 5.0 41.0 1.0 N B:HIS59 5.0 39.7 1.0

N.Zhuang, K.H.Seo, C.Chen, J.Zhou, S.W.Kim, K.H.Lee. Crystallization and Preliminary X-Ray Diffraction Analysis of Mevalonate Kinase From Methanosarcina Mazei. Acta Crystallogr.,Sect.F V. 68 1560 2012.
ISSN: ESSN 1744-3091
PubMed: 23192048
DOI: 10.1107/S1744309112047070