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Magnesium in PDB 4hjh: Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate

Enzymatic activity of Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate

All present enzymatic activity of Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate:
5.4.2.8;

Protein crystallography data

The structure of Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate, PDB code: 4hjh was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.01 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.950, 55.980, 131.670, 90.00, 92.18, 90.00
R / Rfree (%) 17.4 / 20.9

Other elements in 4hjh:

The structure of Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate also contains other interesting chemical elements:

Iodine (I) 75 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate (pdb code 4hjh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate, PDB code: 4hjh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4hjh

Go back to Magnesium Binding Sites List in 4hjh
Magnesium binding site 1 out of 2 in the Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg552

b:6.8
occ:1.00
 OD1 A:ASP244 2.2 9.9 1.0
OD1 A:ASP246 2.2 9.7 1.0
OG A:SEP104 2.2 11.8 1.0
OD2 A:ASP242 2.2 8.0 1.0
O2P A:SEP104 2.9 12.4 1.0
CG A:ASP242 3.0 7.6 1.0
CG A:ASP246 3.1 9.8 1.0
OD1 A:ASP242 3.1 7.5 1.0
P A:SEP104 3.2 12.3 0.8
CG A:ASP244 3.2 10.5 1.0
CB A:SEP104 3.3 11.6 1.0
OD2 A:ASP246 3.4 10.7 1.0
OD2 A:ASP244 3.5 10.8 1.0
CA A:SEP104 3.8 11.6 1.0
O3P A:SEP104 4.0 12.3 1.0
NE A:ARG247 4.1 10.2 1.0
C A:SEP104 4.1 12.4 1.0
CG A:ARG247 4.2 8.8 1.0
NZ A:LYS114 4.2 13.1 1.0
O1P A:SEP104 4.3 13.2 1.0
N A:ASP246 4.3 8.8 1.0
CB A:ASP246 4.3 9.5 1.0
CB A:ASP242 4.4 7.4 1.0
N A:HIS105 4.4 12.9 1.0
CD A:ARG247 4.4 9.2 1.0
NH1 A:ARG346 4.5 11.4 1.0
CB A:ASP244 4.5 11.0 1.0
N A:ASP244 4.6 9.9 1.0
N A:ARG247 4.6 8.1 1.0
CA A:ASP246 4.7 8.8 1.0
O A:SEP104 4.7 12.7 1.0
O A:HOH630 4.7 14.9 1.0
N A:ALA245 4.8 9.0 1.0
C A:ASP246 4.9 8.3 1.0
CA A:ASP244 4.9 10.3 1.0
CB A:ARG247 4.9 8.0 1.0
C A:ASP244 5.0 9.7 1.0

Magnesium binding site 2 out of 2 in 4hjh

Go back to Magnesium Binding Sites List in 4hjh
Magnesium binding site 2 out of 2 in the Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg535

b:14.3
occ:1.00
 OD1 B:ASP246 2.1 19.0 1.0
OD1 B:ASP244 2.2 16.6 1.0
OG B:SEP104 2.3 20.4 1.0
OD2 B:ASP242 2.3 14.6 1.0
O2P B:SEP104 2.9 21.4 1.0
CG B:ASP246 3.0 18.9 1.0
CG B:ASP242 3.0 14.0 1.0
OD1 B:ASP242 3.1 13.9 1.0
CG B:ASP244 3.2 16.9 1.0
P B:SEP104 3.2 20.7 0.9
OD2 B:ASP246 3.3 19.4 1.0
CB B:SEP104 3.4 19.8 1.0
OD2 B:ASP244 3.5 17.4 1.0
CA B:SEP104 3.8 19.6 1.0
O3P B:SEP104 4.0 20.8 1.0
CG B:ARG247 4.1 17.4 1.0
NZ B:LYS114 4.2 20.4 1.0
NE B:ARG247 4.2 19.0 1.0
N B:ASP246 4.2 17.7 1.0
C B:SEP104 4.2 20.4 1.0
CB B:ASP246 4.2 18.7 1.0
O1P B:SEP104 4.3 21.7 1.0
CB B:ASP242 4.4 13.8 1.0
CD B:ARG247 4.4 17.6 1.0
N B:HIS105 4.5 20.3 1.0
CB B:ASP244 4.5 17.3 1.0
NH1 B:ARG346 4.5 20.1 1.0
N B:ASP244 4.6 16.1 1.0
N B:ARG247 4.6 17.0 1.0
CA B:ASP246 4.6 18.1 1.0
O B:HOH617 4.6 27.3 1.0
N B:ALA245 4.8 16.8 1.0
O B:SEP104 4.8 20.8 1.0
C B:ASP246 4.8 17.4 1.0
CA B:ASP244 4.9 16.9 1.0
CB B:ARG247 4.9 16.5 1.0
C B:ASP244 4.9 16.9 1.0

Reference:

J.W.Fairman, T.K.Craig, B.L.Staker. Iodide Sad Phased Crystal Structure of A Phosphoglucomutase From Brucella Melitensis Complexed with Glucose-6-Phosphate To Be Published.
Page generated: Fri Aug 16 16:19:41 2024

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