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Magnesium in PDB 4hnz: Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei

Protein crystallography data

The structure of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei, PDB code: 4hnz was solved by K.H.Sung, S.Y.Lee, H.K.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.13 / 2.39
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 100.881, 106.990, 132.656, 90.00, 104.24, 90.00
R / Rfree (%) 21.8 / 23.9

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei (pdb code 4hnz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei, PDB code: 4hnz:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 4hnz

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Magnesium binding site 1 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg200

b:17.2
occ:1.00
 O A:THR157 2.3 15.1 1.0
O A:SER163 2.4 12.5 1.0
O A:ASP160 2.5 11.2 1.0
O A:HOH342 2.6 11.9 1.0
C A:ASP160 3.5 11.4 1.0
C A:THR157 3.5 15.0 1.0
C A:SER163 3.7 13.3 1.0
CA A:VAL161 3.9 12.0 1.0
N A:VAL161 4.1 11.5 1.0
C A:VAL161 4.2 12.4 1.0
O A:VAL161 4.3 12.7 1.0
O A:ASP158 4.3 15.6 1.0
N A:SER163 4.3 12.1 1.0
CA A:THR157 4.4 14.8 1.0
C A:ASP158 4.4 15.2 1.0
N A:ASP158 4.4 15.6 1.0
CA A:ASP158 4.4 16.5 1.0
CA A:ASN164 4.5 15.3 1.0
CA A:SER163 4.6 12.3 1.0
N A:ASN164 4.6 14.4 1.0
N A:ASP160 4.6 11.8 1.0
CA A:ASP160 4.6 11.4 1.0
CB A:THR157 4.8 15.0 1.0
N A:PHE162 4.8 12.2 1.0
O A:HOH312 4.9 23.1 1.0

Magnesium binding site 2 out of 12 in 4hnz

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Magnesium binding site 2 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg200

b:17.0
occ:1.00
 O B:THR157 2.2 13.5 1.0
O B:SER163 2.3 15.2 1.0
O B:ASP160 2.4 14.2 1.0
O B:HOH305 2.7 8.6 1.0
C B:THR157 3.4 13.6 1.0
C B:ASP160 3.5 13.6 1.0
C B:SER163 3.5 15.1 1.0
CA B:VAL161 4.0 13.5 1.0
N B:VAL161 4.2 13.3 1.0
N B:SER163 4.2 13.7 1.0
C B:VAL161 4.2 13.6 1.0
CA B:THR157 4.3 13.0 1.0
O B:VAL161 4.3 14.0 1.0
N B:ASP158 4.4 14.4 1.0
CA B:SER163 4.4 14.0 1.0
O B:ASP158 4.4 15.6 1.0
C B:ASP158 4.4 15.0 1.0
N B:ASN164 4.4 16.3 1.0
O B:HOH360 4.4 28.2 1.0
N B:ASP160 4.4 13.4 1.0
CA B:ASP158 4.4 15.5 1.0
CA B:ASN164 4.4 17.1 1.0
CA B:ASP160 4.5 13.3 1.0
CB B:THR157 4.6 13.3 1.0
N B:PHE162 4.8 13.4 1.0
CB B:SER163 4.8 13.8 1.0
O G:HOH310 4.9 28.8 1.0
O B:HOH313 4.9 13.6 1.0
N B:ILE159 5.0 14.6 1.0
C B:ILE159 5.0 13.8 1.0

Magnesium binding site 3 out of 12 in 4hnz

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Magnesium binding site 3 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg200

b:19.9
occ:1.00
 O C:THR157 2.4 12.3 1.0
O C:SER163 2.4 14.0 1.0
O C:ASP160 2.5 11.1 1.0
O C:HOH304 2.8 14.1 1.0
C C:ASP160 3.5 10.8 1.0
C C:THR157 3.6 12.4 1.0
C C:SER163 3.6 13.2 1.0
CA C:VAL161 3.9 10.6 1.0
C C:VAL161 4.1 11.0 1.0
N C:VAL161 4.2 10.4 1.0
N C:SER163 4.3 12.1 1.0
O C:VAL161 4.3 11.3 1.0
O C:ASP158 4.4 13.2 1.0
CA C:SER163 4.5 12.6 1.0
CA C:THR157 4.5 11.7 1.0
N C:ASP158 4.5 13.5 1.0
C C:ASP158 4.5 13.2 1.0
CA C:ASN164 4.5 14.4 1.0
CA C:ASP158 4.5 14.2 1.0
O C:HOH328 4.5 18.0 1.0
N C:ASN164 4.5 13.8 1.0
CA C:ASP160 4.6 10.9 1.0
O L:HOH309 4.7 18.0 1.0
N C:ASP160 4.7 11.3 1.0
O C:HOH335 4.7 25.6 1.0
N C:PHE162 4.8 10.9 1.0
CB C:THR157 4.8 11.8 1.0
CB C:SER163 5.0 12.4 1.0

Magnesium binding site 4 out of 12 in 4hnz

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Magnesium binding site 4 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg200

b:14.7
occ:1.00
 O D:SER163 2.3 16.9 1.0
O D:ASP160 2.3 16.2 1.0
O D:THR157 2.4 14.6 1.0
C D:ASP160 3.4 16.6 1.0
C D:SER163 3.5 17.5 1.0
C D:THR157 3.6 15.2 1.0
CA D:VAL161 3.8 16.9 1.0
C D:VAL161 4.0 16.7 1.0
N D:VAL161 4.0 16.3 1.0
N D:SER163 4.1 16.1 1.0
O D:VAL161 4.1 15.6 1.0
CA D:SER163 4.4 16.5 1.0
O D:HOH349 4.5 29.5 1.0
CA D:THR157 4.5 14.8 1.0
O D:ASP158 4.5 17.1 1.0
N D:ASN164 4.5 17.1 1.0
CA D:ASN164 4.5 17.9 1.0
CA D:ASP160 4.5 16.4 1.0
C D:ASP158 4.5 16.7 1.0
N D:ASP160 4.6 16.6 1.0
N D:ASP158 4.6 16.2 1.0
N D:PHE162 4.6 16.3 1.0
CA D:ASP158 4.6 17.6 1.0
CB D:THR157 4.8 15.3 1.0
CB D:SER163 4.9 16.2 1.0

Magnesium binding site 5 out of 12 in 4hnz

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Magnesium binding site 5 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg200

b:16.2
occ:1.00
 O E:SER163 2.1 18.8 1.0
O E:HOH331 2.4 13.5 1.0
O E:THR157 2.4 17.4 1.0
O E:ASP160 2.4 14.7 1.0
C E:SER163 3.4 18.9 1.0
C E:ASP160 3.5 15.5 1.0
C E:THR157 3.6 17.2 1.0
CA E:VAL161 4.0 15.6 1.0
N E:SER163 4.0 16.0 1.0
C E:VAL161 4.1 15.7 1.0
N E:VAL161 4.2 15.2 1.0
O E:VAL161 4.2 15.6 1.0
CA E:SER163 4.3 17.1 1.0
N E:ASN164 4.3 19.8 1.0
CA E:ASN164 4.3 20.6 1.0
CA E:THR157 4.4 15.3 1.0
N E:ASP158 4.5 19.3 1.0
O E:ASP158 4.6 21.4 1.0
C E:ASP158 4.6 19.1 1.0
CA E:ASP158 4.6 20.0 1.0
CA E:ASP160 4.6 15.7 1.0
N E:PHE162 4.7 15.2 1.0
CB E:THR157 4.7 15.3 1.0
N E:ASP160 4.7 16.0 1.0
O E:HOH330 4.8 21.5 1.0
CB E:SER163 4.8 16.6 1.0
OE1 E:GLN19 4.9 21.9 1.0
O J:HOH339 4.9 24.1 1.0

Magnesium binding site 6 out of 12 in 4hnz

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Magnesium binding site 6 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg200

b:13.0
occ:1.00
 O F:THR157 2.2 15.0 1.0
O F:SER163 2.3 13.5 1.0
O F:HOH353 2.3 10.7 1.0
O F:HOH330 2.4 16.4 1.0
O F:ASP160 2.4 11.7 1.0
C F:THR157 3.4 14.2 1.0
C F:ASP160 3.5 11.5 1.0
C F:SER163 3.5 13.4 1.0
CA F:VAL161 4.0 12.1 1.0
N F:VAL161 4.2 11.6 1.0
N F:SER163 4.2 12.3 1.0
C F:VAL161 4.2 12.2 1.0
CA F:THR157 4.3 13.3 1.0
N F:ASP158 4.3 14.8 1.0
O F:ASP158 4.4 15.2 1.0
O F:HOH358 4.4 22.0 1.0
CA F:ASP158 4.4 16.0 1.0
O F:VAL161 4.4 12.7 1.0
CA F:SER163 4.4 12.4 1.0
C F:ASP158 4.4 15.1 1.0
N F:ASN164 4.5 14.2 1.0
CA F:ASN164 4.5 14.9 1.0
CA F:ASP160 4.5 11.4 1.0
N F:ASP160 4.6 11.8 1.0
CB F:THR157 4.6 13.5 1.0
N F:PHE162 4.8 12.0 1.0
CB F:SER163 4.9 11.8 1.0
N F:ILE159 5.0 13.7 1.0

Magnesium binding site 7 out of 12 in 4hnz

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Magnesium binding site 7 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg200

b:18.3
occ:1.00
 O G:SER163 2.2 16.3 1.0
O G:HOH358 2.5 19.2 1.0
O G:THR157 2.5 13.7 1.0
O G:ASP160 2.5 14.2 1.0
O G:HOH360 2.6 31.8 1.0
O G:HOH310 2.6 28.8 1.0
C G:SER163 3.4 15.8 1.0
C G:ASP160 3.6 13.9 1.0
C G:THR157 3.7 13.9 1.0
CA G:VAL161 4.0 14.9 1.0
C G:VAL161 4.1 15.2 1.0
N G:SER163 4.2 14.8 1.0
O G:VAL161 4.2 15.3 1.0
N G:VAL161 4.2 14.4 1.0
CA G:ASN164 4.3 16.7 1.0
N G:ASN164 4.3 15.9 1.0
CA G:SER163 4.4 15.1 1.0
CA G:THR157 4.6 13.7 1.0
O G:ASP158 4.6 14.9 1.0
N G:ASP158 4.6 14.1 1.0
O G:HOH340 4.7 32.0 1.0
CA G:ASP158 4.7 14.6 1.0
N G:ASP160 4.7 13.9 1.0
CA G:ASP160 4.7 13.7 1.0
C G:ASP158 4.7 14.8 1.0
N G:PHE162 4.8 14.6 1.0
CB G:THR157 4.8 14.1 1.0
OE1 G:GLN19 4.8 15.0 1.0
CB G:SER163 4.9 14.8 1.0
O B:HOH305 5.0 8.6 1.0

Magnesium binding site 8 out of 12 in 4hnz

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Magnesium binding site 8 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg200

b:9.7
occ:1.00
 O H:THR157 2.3 13.5 1.0
O H:SER163 2.4 14.3 1.0
O H:ASP160 2.5 12.5 1.0
C H:THR157 3.5 13.3 1.0
C H:ASP160 3.5 12.4 1.0
C H:SER163 3.6 14.4 1.0
CA H:VAL161 4.0 13.0 1.0
N H:VAL161 4.2 12.5 1.0
N H:SER163 4.2 13.3 1.0
C H:VAL161 4.3 13.1 1.0
O H:VAL161 4.4 13.4 1.0
O H:ASP158 4.4 14.7 1.0
CA H:THR157 4.4 12.7 1.0
N H:ASP158 4.4 13.8 1.0
CA H:SER163 4.5 13.7 1.0
N H:ASN164 4.5 15.2 1.0
CA H:ASP158 4.5 14.7 1.0
C H:ASP158 4.5 14.2 1.0
CA H:ASN164 4.5 16.3 1.0
N H:ASP160 4.5 12.6 1.0
CA H:ASP160 4.6 12.2 1.0
O H:HOH311 4.7 17.0 1.0
CB H:THR157 4.7 12.9 1.0
N H:PHE162 4.9 12.9 1.0
O A:HOH342 4.9 11.9 1.0
CB H:SER163 4.9 13.2 1.0

Magnesium binding site 9 out of 12 in 4hnz

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Magnesium binding site 9 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg200

b:20.4
occ:1.00
 O I:SER163 2.3 17.6 1.0
O I:THR157 2.3 15.4 1.0
O I:ASP160 2.6 14.5 1.0
C I:THR157 3.5 15.4 1.0
C I:SER163 3.5 17.0 1.0
C I:ASP160 3.7 13.8 1.0
CA I:VAL161 4.2 13.4 1.0
N I:SER163 4.3 14.8 1.0
CA I:ASN164 4.3 18.8 1.0
CA I:THR157 4.3 14.6 1.0
N I:VAL161 4.3 13.4 1.0
C I:VAL161 4.3 13.4 1.0
N I:ASN164 4.4 17.9 1.0
O I:HOH334 4.4 20.7 1.0
N I:ASP158 4.4 16.4 1.0
CA I:SER163 4.4 15.5 1.0
O I:VAL161 4.4 13.9 1.0
CA I:ASP158 4.5 17.3 1.0
O I:ASP158 4.5 17.2 1.0
C I:ASP158 4.5 16.8 1.0
CB I:THR157 4.6 14.8 1.0
N I:ASP160 4.7 14.4 1.0
CA I:ASP160 4.7 14.1 1.0
CB I:SER163 4.9 15.1 1.0
N I:PHE162 4.9 13.4 1.0

Magnesium binding site 10 out of 12 in 4hnz

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Magnesium binding site 10 out of 12 in the Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Eukaryotic Hslv From Trypanosoma Brucei within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg200

b:23.1
occ:1.00
 O J:SER163 2.1 15.8 1.0
O J:THR157 2.4 18.1 1.0
O J:ASP160 2.5 15.4 1.0
O J:HOH329 2.5 15.0 1.0
O J:HOH339 2.7 24.1 1.0
C J:SER163 3.3 15.8 1.0
C J:ASP160 3.6 15.7 1.0
C J:THR157 3.7 17.4 1.0
CA J:VAL161 4.0 14.5 1.0
N J:SER163 4.1 14.9 1.0
C J:VAL161 4.1 14.3 1.0
O J:VAL161 4.2 14.8 1.0
N J:VAL161 4.2 14.8 1.0
N J:ASN164 4.3 16.9 1.0
CA J:SER163 4.3 15.2 1.0
CA J:ASN164 4.3 17.8 1.0
CA J:THR157 4.5 16.6 1.0
N J:ASP158 4.6 18.0 1.0
O J:ASP158 4.6 21.4 1.0
O J:HOH328 4.6 23.5 1.0
C J:ASP158 4.6 19.3 1.0
CA J:ASP160 4.6 16.1 1.0
N J:ASP160 4.7 17.2 1.0
N J:PHE162 4.7 14.0 1.0
CA J:ASP158 4.7 19.0 1.0
CB J:THR157 4.7 16.2 1.0
CB J:SER163 4.8 15.2 1.0
OE1 J:GLN19 4.8 18.5 1.0

Reference:

K.H.Sung, S.Y.Lee, H.K.Song. Structural and Biochemical Analyses of the Eukaryotic Heat Shock Locus V (Hslv) From Trypanosoma Brucei. J.Biol.Chem. V. 288 23234 2013.
ISSN: ISSN 0021-9258
PubMed: 23818520
DOI: 10.1074/JBC.M113.484832
Page generated: Fri Aug 16 16:21:33 2024

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