Atomistry » Magnesium » PDB 4hmy-4hyv » 4hpu
Atomistry »
  Magnesium »
    PDB 4hmy-4hyv »
      4hpu »

Magnesium in PDB 4hpu: Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide

Enzymatic activity of Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide

All present enzymatic activity of Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide:
2.7.11.11;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide, PDB code: 4hpu was solved by A.C.Bastidas, J.M.Steichen, J.Wu, S.S.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.91 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.690, 79.800, 98.140, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 19.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide (pdb code 4hpu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide, PDB code: 4hpu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4hpu

Go back to Magnesium Binding Sites List in 4hpu
Magnesium binding site 1 out of 2 in the Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg403

b:10.3
occ:1.00
O I:HOH714 1.8 16.0 1.0
O1P I:SEP21 2.0 12.1 0.5
O1B I:ANP600 2.0 11.4 0.6
O3G I:ANP600 2.1 10.0 0.6
O1B E:ANP402 2.2 8.5 0.5
O E:HOH595 2.2 13.2 1.0
OD2 E:ASP184 2.3 8.6 1.0
OD1 E:ASP184 2.3 8.2 1.0
CG E:ASP184 2.6 7.1 1.0
PG I:ANP600 3.2 10.4 0.6
PB I:ANP600 3.2 9.1 0.6
PB E:ANP402 3.4 7.6 0.5
O I:HOH747 3.4 9.8 0.5
P I:SEP21 3.4 12.2 0.5
N3B E:ANP402 3.5 9.3 0.5
N3B I:ANP600 3.5 11.0 0.6
O2G I:ANP600 3.8 8.9 0.6
O3P I:SEP21 3.8 13.3 0.5
O E:HOH739 3.8 20.6 1.0
O I:HOH731 3.9 29.1 1.0
MG E:MG404 3.9 6.7 1.0
CB E:ASP184 4.1 6.1 1.0
OD2 E:ASP166 4.2 11.6 1.0
O2B I:ANP600 4.2 11.5 0.6
NZ E:LYS72 4.3 10.3 1.0
OG I:SEP21 4.3 12.6 1.0
CA E:GLY186 4.3 7.4 1.0
O3A I:ANP600 4.4 8.6 0.6
O3A E:ANP402 4.4 7.2 0.5
O2B E:ANP402 4.5 9.3 0.5
O2P I:SEP21 4.5 11.7 0.5
O1G I:ANP600 4.5 10.9 0.6
N E:GLY186 4.5 6.5 1.0
O2A I:ANP600 4.5 8.7 0.6
O2A E:ANP402 4.6 4.8 0.5
CB I:SEP21 4.7 11.5 1.0
PA I:ANP600 4.7 9.2 0.6
O1A I:ANP600 4.8 9.3 0.6
CA E:ASP184 4.9 6.2 1.0
PA E:ANP402 4.9 5.7 0.5

Magnesium binding site 2 out of 2 in 4hpu

Go back to Magnesium Binding Sites List in 4hpu
Magnesium binding site 2 out of 2 in the Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Catalytic Subunit of Camp-Dependent Protein Kinase Displaying Partial Phosphoryl Transfer of Amp-Pnp Onto A Substrate Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg404

b:6.7
occ:1.00
O2G I:ANP600 1.8 8.9 0.6
O2A I:ANP600 2.0 8.7 0.6
O2A E:ANP402 2.1 4.8 0.5
O E:HOH596 2.1 10.7 1.0
OD1 E:ASN171 2.2 7.2 1.0
OD2 E:ASP184 2.2 8.6 1.0
N3B E:ANP402 2.3 9.3 0.5
O I:HOH747 2.5 9.8 0.5
N3B I:ANP600 2.5 11.0 0.6
PG I:ANP600 2.7 10.4 0.6
CG E:ASN171 3.2 6.2 1.0
CG E:ASP184 3.2 7.1 1.0
PA I:ANP600 3.3 9.2 0.6
PA E:ANP402 3.5 5.7 0.5
PB I:ANP600 3.5 9.1 0.6
O3G I:ANP600 3.5 10.0 0.6
PB E:ANP402 3.5 7.6 0.5
ND2 E:ASN171 3.6 7.0 1.0
O1B I:ANP600 3.7 11.4 0.6
CB E:ASP184 3.7 6.1 1.0
O3A I:ANP600 3.7 8.6 0.6
O1P I:SEP21 3.8 12.1 0.5
O3A E:ANP402 3.9 7.2 0.5
O1G I:ANP600 3.9 10.9 0.6
MG E:MG403 3.9 10.3 1.0
O1B E:ANP402 3.9 8.5 0.5
CE E:LYS168 4.1 8.3 1.0
O E:HOH882 4.3 24.2 1.0
O1A I:ANP600 4.3 9.3 0.6
OD1 E:ASP184 4.3 8.2 1.0
NZ E:LYS168 4.3 8.0 1.0
O3' E:ANP402 4.3 4.4 0.5
C5' E:ANP402 4.4 4.6 0.5
O I:HOH703 4.4 13.7 1.0
O5' I:ANP600 4.4 8.4 0.6
O5' E:ANP402 4.4 4.4 0.5
OD2 E:ASP166 4.5 11.6 1.0
O1A E:ANP402 4.5 6.1 0.5
CB E:ASN171 4.6 5.8 1.0
O3' I:ANP600 4.6 11.2 0.6
C5' I:ANP600 4.6 8.5 0.6
O2P I:SEP21 4.7 11.7 0.5
O I:HOH702 4.7 22.8 1.0
O2B E:ANP402 4.8 9.3 0.5
O E:HOH595 4.8 13.2 1.0
O2B I:ANP600 4.9 11.5 0.6
P I:SEP21 4.9 12.2 0.5
C3' E:ANP402 4.9 4.2 0.5
CA E:ASN171 4.9 6.2 1.0
O E:GLU170 5.0 7.5 1.0

Reference:

A.C.Bastidas, M.S.Deal, J.M.Steichen, Y.Guo, J.Wu, S.S.Taylor. Phosphoryl Transfer By Protein Kinase A Is Captured in A Crystal Lattice. J.Am.Chem.Soc. V. 135 4788 2013.
ISSN: ISSN 0002-7863
PubMed: 23458248
DOI: 10.1021/JA312237Q
Page generated: Mon Aug 11 13:54:41 2025

Last articles

Mg in 4LF4
Mg in 4LF5
Mg in 4LCZ
Mg in 4LF2
Mg in 4LF1
Mg in 4LEM
Mg in 4LCK
Mg in 4LE0
Mg in 4LDZ
Mg in 4LDT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy