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Magnesium in PDB 4hqo: Crystal Structure of Plasmodium Vivax Trap Protein

Protein crystallography data

The structure of Crystal Structure of Plasmodium Vivax Trap Protein, PDB code: 4hqo was solved by G.Song, A.C.Koksal, C.Lu, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.43 / 2.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.294, 100.474, 158.547, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 20

Other elements in 4hqo:

The structure of Crystal Structure of Plasmodium Vivax Trap Protein also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Plasmodium Vivax Trap Protein (pdb code 4hqo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Plasmodium Vivax Trap Protein, PDB code: 4hqo:

Magnesium binding site 1 out of 1 in 4hqo

Go back to Magnesium Binding Sites List in 4hqo
Magnesium binding site 1 out of 1 in the Crystal Structure of Plasmodium Vivax Trap Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plasmodium Vivax Trap Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:56.8
occ:1.00
O A:HOH408 2.1 47.8 1.0
O A:HOH523 2.2 36.8 1.0
O A:HOH401 2.2 36.7 1.0
OG1 A:THR127 2.2 40.9 1.0
OG A:SER54 2.2 37.2 1.0
OG A:SER52 2.3 31.3 1.0
CB A:SER52 3.1 25.7 1.0
CB A:SER54 3.4 30.5 1.0
CB A:THR127 3.5 32.7 1.0
O A:VAL160 3.8 36.9 1.0
N A:SER54 3.9 38.9 1.0
CG2 A:THR127 4.0 25.0 1.0
O A:HOH402 4.1 41.4 1.0
O A:HOH603 4.1 74.5 1.0
CA A:SER54 4.2 39.0 1.0
O A:HOH695 4.2 80.2 1.0
OD2 A:ASP158 4.3 41.4 1.0
OD1 A:ASP158 4.4 38.8 1.0
CA A:SER52 4.4 30.2 1.0
OD1 A:ASP50 4.4 35.1 1.0
CA A:THR127 4.5 33.8 1.0
C A:SER52 4.6 31.1 1.0
C A:THR126 4.6 29.3 1.0
N A:THR127 4.6 32.8 1.0
O A:GLY125 4.6 34.1 1.0
N A:GLY53 4.6 33.3 1.0
OD2 A:ASP50 4.7 28.9 1.0
O A:HOH651 4.7 69.5 1.0
CB A:VAL160 4.7 39.4 1.0
O A:THR126 4.7 32.3 1.0
CG A:ASP158 4.8 36.0 1.0
N A:ILE55 4.9 35.4 1.0
C A:VAL160 4.9 32.3 1.0
C A:SER54 4.9 31.4 1.0

Reference:

G.Song, A.C.Koksal, C.Lu, T.A.Springer. Shape Change in the Receptor For Gliding Motility in Plasmodium Sporozoites. Proc.Natl.Acad.Sci.Usa V. 109 21420 2012.
ISSN: ISSN 0027-8424
PubMed: 23236185
DOI: 10.1073/PNAS.1218581109
Page generated: Mon Dec 14 18:50:17 2020

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