Magnesium in PDB 4hvj: Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp

The structure of Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp, PDB code: 4hvj was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.49 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.520, 76.250, 105.770, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 22.7

The binding sites of Magnesium atom in the Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp (pdb code 4hvj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp, PDB code: 4hvj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:27.1 occ:1.00 O A:HOH401 2.0 23.5 1.0 OD1 A:ASP7 2.0 20.3 1.0 O A:HOH402 2.0 23.4 1.0 O2P A:AMP300 2.0 48.7 1.0 O A:HOH475 2.1 34.9 1.0 O A:HOH403 2.2 23.9 1.0 CG A:ASP7 3.1 20.8 1.0 P A:AMP300 3.3 53.8 1.0 OD2 A:ASP7 3.5 25.7 1.0 O A:HOH480 3.8 35.3 1.0 O1P A:AMP300 3.9 50.5 1.0 OD1 A:ASP96 3.9 17.8 1.0 C5' A:AMP300 4.0 45.6 1.0 O5' A:AMP300 4.0 47.9 1.0 OD2 A:ASP96 4.0 20.8 1.0 OD2 A:ASP146 4.0 25.6 0.5 O A:THR8 4.2 17.5 1.0 O A:HOH404 4.3 18.5 1.0 CG A:ASP96 4.4 17.9 1.0 CB A:ASP7 4.4 18.6 1.0 O A:HOH411 4.5 20.4 1.0 O A:TRP91 4.5 19.8 1.0 O3P A:AMP300 4.5 49.4 1.0 CG A:ASP146 4.7 25.5 0.5 N A:THR8 4.7 15.6 1.0 CA A:ASP7 4.8 15.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Putative Uncharacterized Protein From Mycobacterium Tuberculosis in Complex with Amp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:38.4 occ:1.00 O B:HOH474 2.5 44.8 1.0 OD1 B:ASP7 2.6 23.0 1.0 O B:THR8 2.7 19.6 1.0 OD1 B:ASP96 2.8 20.8 1.0 CG B:ASP96 3.6 18.4 1.0 CG B:ASP7 3.7 22.6 1.0 OD2 B:ASP96 3.7 19.4 1.0 C B:THR8 3.8 18.9 1.0 OD2 B:ASP7 4.0 23.4 1.0 N B:THR8 4.0 18.4 1.0 OG1 B:THR8 4.3 18.1 1.0 CE2 B:PHE10 4.3 18.5 1.0 O B:HOH477 4.4 39.4 1.0 CA B:THR8 4.5 18.5 1.0 O B:HOH442 4.8 29.4 1.0 OE2 B:GLU9 4.8 40.9 1.0 N B:GLU9 4.9 20.7 1.0 CZ B:PHE10 4.9 19.4 1.0 CB B:ASP7 5.0 21.3 1.0 OE1 B:GLU9 5.0 32.5 1.0 CD B:GLU9 5.0 31.4 1.0 C B:ASP7 5.0 19.2 1.0

J.Abendroth, A.Ollodart, E.S.Andrews, P.J.Myler, B.L.Staker, T.E.Edwards, V.L.Arcus, C.Grundner. Mycobacterium Tuberculosis RV2179C Protein Establishes A New Exoribonuclease Family with Broad Phylogenetic Distribution. J.Biol.Chem. V. 289 2139 2014.
ISSN: ISSN 0021-9258
PubMed: 24311791
DOI: 10.1074/JBC.M113.525683