Magnesium in PDB 4ifu: Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, Apo Form

All present enzymatic activity of Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, Apo Form:
2.7.1.180;

The structure of Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, Apo Form, PDB code: 4ifu was solved by D.R.Tomchick, C.A.Brautigam, R.K.Deka, M.V.Norgard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.75 / 1.83
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	117.587, 47.282, 57.593, 90.00, 102.04, 90.00
R / Rfree (%)	16.9 / 21.7

The binding sites of Magnesium atom in the Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, Apo Form (pdb code 4ifu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, Apo Form, PDB code: 4ifu:

Magnesium binding site 1 out of 1 in the Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Treponema Pallidum TP0796 Flavin Trafficking Protein, Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:11.9 occ:1.00 HG1 A:THR288 1.8 15.2 1.0 O A:HOH702 2.2 22.0 1.0 O A:HOH701 2.2 25.8 1.0 OG1 A:THR288 2.4 12.6 1.0 O A:ASP284 2.4 10.5 1.0 OD1 A:ASP284 2.4 17.4 1.0 O A:ALA162 2.5 15.8 1.0 HB1 A:ALA162 3.2 16.5 1.0 C A:ASP284 3.2 11.5 1.0 CG A:ASP284 3.3 15.7 1.0 C A:ALA162 3.4 20.2 1.0 HA A:ASP284 3.5 9.6 1.0 H A:THR288 3.5 13.2 1.0 HA A:ALA162 3.5 14.1 1.0 CB A:THR288 3.6 14.6 1.0 HB A:THR288 3.6 17.5 1.0 CA A:ASP284 3.7 8.0 1.0 CA A:ALA162 3.8 11.7 1.0 HB3 A:ALA287 3.9 16.1 1.0 CB A:ALA162 3.9 13.8 1.0 CB A:ASP284 4.0 8.1 1.0 N A:THR288 4.0 11.0 1.0 HA A:ALA285 4.1 11.2 1.0 OD2 A:ASP284 4.1 16.2 1.0 HG11 A:VAL238 4.2 20.6 1.0 N A:ALA285 4.2 12.6 1.0 HB3 A:ASP284 4.2 9.7 1.0 O A:HOH703 4.2 33.0 1.0 CA A:THR288 4.3 9.6 1.0 HG A:SER240 4.3 35.2 1.0 HA A:ILE163 4.4 16.3 1.0 HA A:THR288 4.5 11.5 1.0 HB2 A:ALA162 4.5 16.5 1.0 HB3 A:ALA162 4.5 16.5 1.0 OG A:SER240 4.6 29.3 1.0 CA A:ALA285 4.6 9.3 1.0 N A:ILE163 4.6 14.7 1.0 HG21 A:THR288 4.7 19.1 1.0 CG2 A:THR288 4.7 15.9 1.0 HG12 A:VAL238 4.7 20.6 1.0 O A:HOH751 4.8 25.9 1.0 CB A:ALA287 4.8 13.4 1.0 O A:HOH709 4.8 17.2 1.0 HB2 A:ASP284 4.9 9.7 1.0 CG1 A:VAL238 4.9 17.1 1.0 HD22 A:ASN191 4.9 28.9 0.6 H A:ALA287 4.9 15.5 1.0 H A:ALA285 4.9 15.1 1.0 HG23 A:THR288 4.9 19.1 1.0 C A:ALA287 5.0 9.9 1.0 C A:ALA285 5.0 7.9 1.0

R.K.Deka, C.A.Brautigam, W.Z.Liu, D.R.Tomchick, M.V.Norgard. The TP0796 Lipoprotein of Treponema Pallidum Is A Bimetal-Dependent Fad Pyrophosphatase with A Potential Role in Flavin Homeostasis. J.Biol.Chem. V. 288 11106 2013.
ISSN: ISSN 0021-9258
PubMed: 23447540
DOI: 10.1074/JBC.M113.449975