Atomistry » Magnesium » PDB 4iir-4iwh » 4ip2
Atomistry »
  Magnesium »
    PDB 4iir-4iwh »
      4ip2 »

Magnesium in PDB 4ip2: Putative Aromatic Acid Decarboxylase

Protein crystallography data

The structure of Putative Aromatic Acid Decarboxylase, PDB code: 4ip2 was solved by G.Schneider, K.Brunner, A.Izumi, A.Jacewicz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.30 / 1.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.850, 96.850, 301.481, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 24.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Putative Aromatic Acid Decarboxylase (pdb code 4ip2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Putative Aromatic Acid Decarboxylase, PDB code: 4ip2:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4ip2

Go back to Magnesium Binding Sites List in 4ip2
Magnesium binding site 1 out of 3 in the Putative Aromatic Acid Decarboxylase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Putative Aromatic Acid Decarboxylase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:30.2
occ:1.00
O A:HOH690 2.0 28.5 1.0
OE2 A:GLU229 2.1 30.6 1.0
O A:HOH689 2.1 34.0 1.0
O A:HOH692 2.1 34.4 1.0
O A:HOH691 2.2 29.1 1.0
ND1 A:HIS188 2.4 31.9 1.0
CD A:GLU229 3.1 31.4 1.0
CE1 A:HIS188 3.2 32.5 1.0
OE1 A:GLU229 3.4 30.1 1.0
CG A:HIS188 3.5 32.4 1.0
CB A:HIS188 3.8 32.1 1.0
O A:HOH621 3.9 37.4 1.0
O A:VAL227 4.3 32.8 1.0
CG A:GLU229 4.4 31.1 1.0
OG A:SER165 4.4 30.1 1.0
NE2 A:HIS188 4.4 31.9 1.0
O A:LEU223 4.4 33.9 1.0
O A:HOH802 4.5 37.8 1.0
O A:TRP166 4.5 31.3 1.0
CZ2 A:TRP163 4.5 30.3 1.0
CD2 A:HIS188 4.5 32.1 1.0
CB A:LEU223 4.7 33.9 1.0
O A:PRO224 4.7 33.0 1.0
NE1 A:TRP163 4.8 30.9 1.0

Magnesium binding site 2 out of 3 in 4ip2

Go back to Magnesium Binding Sites List in 4ip2
Magnesium binding site 2 out of 3 in the Putative Aromatic Acid Decarboxylase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Putative Aromatic Acid Decarboxylase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:31.3
occ:1.00
OE2 B:GLU229 2.0 31.2 1.0
O B:HOH601 2.0 29.9 1.0
O B:HOH695 2.0 27.6 1.0
O B:HOH614 2.1 28.0 1.0
ND1 B:HIS188 2.2 31.9 1.0
O B:HOH694 2.3 30.2 1.0
CE1 B:HIS188 2.9 32.3 1.0
CD B:GLU229 3.0 33.5 1.0
OE1 B:GLU229 3.4 29.9 1.0
CG B:HIS188 3.5 31.4 1.0
CB B:HIS188 4.0 30.0 1.0
O B:HOH707 4.1 29.4 1.0
O B:VAL227 4.1 36.7 1.0
O B:HOH765 4.1 41.7 1.0
NE2 B:HIS188 4.1 32.0 1.0
CG B:GLU229 4.3 33.0 1.0
O B:LEU223 4.4 37.5 1.0
O B:TRP166 4.4 34.5 1.0
CD2 B:HIS188 4.4 31.9 1.0
CB B:LEU223 4.5 37.6 1.0
OG B:SER165 4.5 33.2 1.0
O B:PRO224 4.6 39.3 1.0
CZ2 B:TRP163 4.6 34.8 1.0
NE1 B:TRP163 4.8 36.0 1.0
C B:LEU223 4.9 37.5 1.0

Magnesium binding site 3 out of 3 in 4ip2

Go back to Magnesium Binding Sites List in 4ip2
Magnesium binding site 3 out of 3 in the Putative Aromatic Acid Decarboxylase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Putative Aromatic Acid Decarboxylase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg501

b:38.9
occ:1.00
O C:HOH641 1.8 36.6 1.0
OE1 C:GLU229 2.0 36.8 1.0
O C:HOH639 2.0 31.4 1.0
O C:HOH640 2.1 32.5 1.0
O C:HOH642 2.2 32.0 1.0
ND1 C:HIS188 2.5 48.5 1.0
CE1 C:HIS188 3.0 48.6 1.0
CD C:GLU229 3.1 33.3 1.0
OE2 C:GLU229 3.6 31.9 1.0
CG C:HIS188 3.6 47.7 1.0
O C:VAL227 3.9 40.9 1.0
O C:LEU223 4.1 48.7 1.0
CB C:HIS188 4.2 43.5 1.0
NE2 C:HIS188 4.2 50.6 1.0
CB C:LEU223 4.3 45.3 1.0
CG C:GLU229 4.4 34.9 1.0
CZ2 C:TRP163 4.4 37.8 1.0
O C:PRO224 4.5 50.7 1.0
CD2 C:HIS188 4.5 49.3 1.0
O C:TRP166 4.6 33.3 1.0
OG C:SER165 4.7 34.2 1.0
C C:LEU223 4.7 47.3 1.0
NE1 C:TRP163 4.7 36.5 1.0
O C:MET221 4.9 42.5 1.0
CA C:LEU223 4.9 47.4 1.0
N C:LEU223 4.9 47.6 1.0
CE2 C:TRP163 5.0 36.1 1.0

Reference:

A.Jacewicz, A.Izumi, K.Brunner, R.Schnell, G.Schneider. Structural Insights Into the Ubid Protein Family From the Crystal Structure of PA0254 From Pseudomonas Aeruginosa. Plos One V. 8 63161 2013.
ISSN: ESSN 1932-6203
PubMed: 23671667
DOI: 10.1371/JOURNAL.PONE.0063161
Page generated: Mon Dec 14 18:54:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy