Atomistry » Magnesium » PDB 4iir-4iwh » 4ip4
Atomistry »
  Magnesium »
    PDB 4iir-4iwh »
      4ip4 »

Magnesium in PDB 4ip4: Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg

Protein crystallography data

The structure of Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg, PDB code: 4ip4 was solved by A.A.Fedorov, E.V.Fedorov, T.Lukk, J.A.Gerlt, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.59 / 2.13
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 101.051, 141.332, 59.778, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 18.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg (pdb code 4ip4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg, PDB code: 4ip4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4ip4

Go back to Magnesium Binding Sites List in 4ip4
Magnesium binding site 1 out of 2 in the Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:15.3
occ:1.00
OE2 A:GLU272 2.0 14.8 1.0
O A:HOH843 2.0 10.7 1.0
OD2 A:ASP246 2.0 16.3 1.0
O A:HOH842 2.1 13.4 1.0
OE1 A:GLU299 2.1 15.2 1.0
O A:HOH781 2.2 11.8 1.0
CD A:GLU272 3.0 19.6 1.0
CG A:ASP246 3.1 20.2 1.0
CD A:GLU299 3.1 15.8 1.0
OE2 A:GLU299 3.4 16.1 1.0
OD1 A:ASP246 3.4 15.3 1.0
NZ A:LYS218 3.7 13.6 1.0
CG A:GLU272 3.8 15.2 1.0
OE1 A:GLU272 3.9 16.8 1.0
NZ A:LYS216 3.9 16.1 1.0
O A:HOH743 4.0 19.6 1.0
O A:HOH632 4.1 18.4 1.0
O A:HOH633 4.2 13.8 1.0
O3 A:GOL501 4.3 19.4 1.0
OE1 A:GLU273 4.3 12.7 1.0
CD2 A:HIS349 4.3 16.4 1.0
ND2 A:ASN248 4.3 15.8 1.0
CG A:GLU299 4.4 14.4 1.0
CB A:ASP246 4.4 15.2 1.0
OD1 A:ASN248 4.6 13.6 1.0
NE2 A:HIS349 4.7 18.8 1.0
CG A:ASN248 4.7 15.9 1.0
CE A:LYS216 4.7 14.8 1.0
CG A:GLU273 5.0 12.0 1.0
CB A:GLU299 5.0 15.8 1.0
CB A:GLU272 5.0 13.7 1.0

Magnesium binding site 2 out of 2 in 4ip4

Go back to Magnesium Binding Sites List in 4ip4
Magnesium binding site 2 out of 2 in the Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:16.9
occ:1.00
OE2 B:GLU272 1.9 17.2 1.0
O B:HOH845 2.1 12.8 1.0
OE1 B:GLU299 2.1 14.1 1.0
O B:HOH844 2.1 12.7 1.0
OD2 B:ASP246 2.1 13.2 1.0
O B:HOH787 2.2 13.6 1.0
CD B:GLU299 3.0 18.6 1.0
CD B:GLU272 3.0 21.4 1.0
CG B:ASP246 3.1 15.1 1.0
OE2 B:GLU299 3.3 15.0 1.0
OD1 B:ASP246 3.4 14.4 1.0
NZ B:LYS218 3.8 13.0 1.0
CG B:GLU272 3.8 12.4 1.0
OE1 B:GLU272 3.9 19.1 1.0
O B:HOH682 4.0 20.2 1.0
O B:HOH733 4.0 20.5 1.0
NZ B:LYS216 4.0 19.7 1.0
O B:HOH642 4.1 16.2 1.0
OE1 B:GLU273 4.3 13.4 1.0
ND2 B:ASN248 4.3 15.0 1.0
CG B:GLU299 4.3 11.7 1.0
CD2 B:HIS349 4.3 13.1 1.0
O3 B:GOL501 4.4 20.6 1.0
CB B:ASP246 4.5 15.6 1.0
OD1 B:ASN248 4.7 17.4 1.0
NE2 B:HIS349 4.8 17.9 1.0
CE B:LYS216 4.8 16.9 1.0
CG B:ASN248 4.8 20.7 1.0
CB B:GLU299 4.9 9.9 1.0
CB B:GLU272 4.9 11.5 1.0
CG B:GLU273 4.9 17.4 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, T.Lukk, J.A.Gerlt, S.C.Almo. Crystal Structure of L-Fuconate Dehydratase From Silicibacter Sp. TM1040 Liganded with Mg To Be Published.
Page generated: Fri Aug 16 16:58:01 2024

Last articles

Sr in 3BNQ
Sr in 2X53
Sr in 2SPT
Sr in 2QJY
Sr in 2XRM
Sr in 2WOH
Sr in 2RIO
Sr in 2PN4
Sr in 2QJP
Sr in 2HMP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy