Atomistry » Magnesium » PDB 4iir-4iwh » 4iqj
Atomistry »
  Magnesium »
    PDB 4iir-4iwh »
      4iqj »

Magnesium in PDB 4iqj: Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome

Enzymatic activity of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome

All present enzymatic activity of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome:
2.7.7.7;

Protein crystallography data

The structure of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome, PDB code: 4iqj was solved by B.Liu, J.Lin, T.Steitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 188.530, 94.970, 204.080, 90.00, 89.97, 90.00
R / Rfree (%) 26.4 / 30.5

Other elements in 4iqj:

The structure of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome also contains other interesting chemical elements:

Zinc (Zn) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome (pdb code 4iqj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome, PDB code: 4iqj:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4iqj

Go back to Magnesium Binding Sites List in 4iqj
Magnesium binding site 1 out of 4 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1304

b:0.4
occ:1.00
 OD1 A:ASP463 1.8 0.5 1.0
OD2 A:ASP618 1.8 0.8 1.0
OD1 A:ASP465 2.4 0.4 1.0
CG A:ASP463 2.6 0.3 1.0
OD2 A:ASP463 2.7 0.9 1.0
CG A:ASP618 2.7 0.5 1.0
NZ A:LYS616 3.3 0.7 1.0
CB A:ASP618 3.4 0.7 1.0
CG A:ASP465 3.5 0.8 1.0
OD1 A:ASP618 3.6 0.5 1.0
O A:LYS616 3.7 0.3 1.0
N A:ASP618 3.8 0.7 1.0
C A:MET617 4.0 0.9 1.0
CB A:ASP463 4.1 0.3 1.0
OD2 A:ASP465 4.1 0.7 1.0
CE A:LYS616 4.2 0.5 1.0
CA A:ASP618 4.3 0.5 1.0
CA A:MET617 4.4 0.9 1.0
O A:MET617 4.5 0.1 1.0
O A:ILE464 4.5 0.1 1.0
C A:LYS616 4.5 1.0 1.0
CA A:ASP463 4.6 0.5 1.0
C A:ASP463 4.6 0.9 1.0
C A:ILE464 4.7 0.2 1.0
CB A:ASP465 4.7 0.8 1.0
CA A:ASP465 4.7 0.4 1.0
N A:ILE464 4.7 0.3 1.0
N A:ASP465 4.7 0.0 1.0
N A:MET617 4.8 0.9 1.0

Magnesium binding site 2 out of 4 in 4iqj

Go back to Magnesium Binding Sites List in 4iqj
Magnesium binding site 2 out of 4 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1304

b:0.9
occ:1.00
 OD1 B:ASP465 2.4 0.3 1.0
OD2 B:ASP618 2.6 0.3 1.0
OD1 B:ASP463 2.6 0.7 1.0
OD2 B:ASP463 2.6 0.8 1.0
CG B:ASP463 2.8 1.0 1.0
CG B:ASP618 3.1 0.8 1.0
CE B:LYS616 3.5 0.4 1.0
N B:ASP618 3.5 0.5 1.0
CG B:ASP465 3.5 0.7 1.0
O B:ILE464 3.6 0.9 1.0
CB B:ASP618 3.6 0.2 1.0
OD1 B:ASP618 3.8 0.8 1.0
O B:LYS616 3.9 0.8 1.0
C B:MET617 4.0 0.8 1.0
CA B:MET617 4.0 0.3 1.0
C B:ILE464 4.0 1.0 1.0
CB B:ASP463 4.1 0.4 1.0
CA B:ASP618 4.1 0.6 1.0
OD2 B:ASP465 4.1 0.9 1.0
NZ B:LYS616 4.2 0.3 1.0
C B:ASP463 4.2 0.2 1.0
N B:ILE464 4.3 0.2 1.0
C B:LYS616 4.3 0.2 1.0
N B:MET617 4.4 0.1 1.0
CA B:ASP463 4.4 0.6 1.0
N B:ASP465 4.5 0.1 1.0
CA B:ASP465 4.6 0.5 1.0
O B:ASP463 4.6 0.7 1.0
CB B:ASP465 4.6 0.9 1.0
CD B:LYS616 4.7 0.6 1.0
CG B:LYS616 4.8 0.9 1.0
O B:MET617 4.8 0.8 1.0
CA B:ILE464 4.8 0.6 1.0

Magnesium binding site 3 out of 4 in 4iqj

Go back to Magnesium Binding Sites List in 4iqj
Magnesium binding site 3 out of 4 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1304

b:0.7
occ:1.00
 OD2 C:ASP618 1.5 0.9 1.0
OD1 C:ASP465 1.8 0.1 1.0
OD2 C:ASP463 2.0 0.8 1.0
CG C:ASP465 2.6 0.1 1.0
CG C:ASP618 2.7 0.3 1.0
NZ C:LYS616 2.7 0.8 1.0
OD2 C:ASP465 2.8 1.0 1.0
CG C:ASP463 2.9 0.9 1.0
OD1 C:ASP463 3.4 0.1 1.0
CB C:ASP618 3.5 0.5 1.0
OD1 C:ASP618 3.7 0.9 1.0
CB C:ASP465 4.1 0.6 1.0
CE C:LYS616 4.1 0.1 1.0
CB C:ASP463 4.2 0.0 1.0
CA C:ASP465 4.6 0.5 1.0
N C:ASP618 4.7 0.1 1.0
CA C:ASP618 4.7 1.0 1.0
N C:ASP465 4.7 0.2 1.0
C C:ASP463 4.9 0.4 1.0
C C:ILE464 4.9 0.5 1.0
O C:ILE464 4.9 0.8 1.0
O C:ASP463 5.0 0.2 1.0

Magnesium binding site 4 out of 4 in 4iqj

Go back to Magnesium Binding Sites List in 4iqj
Magnesium binding site 4 out of 4 in the Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1304

b:0.3
occ:1.00
 OD1 D:ASP465 2.1 0.3 1.0
OD2 D:ASP618 3.0 1.0 1.0
OD1 D:ASP463 3.0 0.5 1.0
O D:ILE464 3.0 0.3 1.0
N D:ASP618 3.1 0.9 1.0
CG D:ASP618 3.2 0.4 1.0
CG D:ASP465 3.4 0.9 1.0
CG D:ASP463 3.4 0.8 1.0
OD2 D:ASP463 3.4 0.9 1.0
CB D:ASP618 3.5 0.3 1.0
C D:ILE464 3.5 0.4 1.0
C D:MET617 3.6 0.6 1.0
O D:LYS616 3.6 0.6 1.0
CA D:MET617 3.7 0.5 1.0
OD1 D:ASP618 3.9 0.9 1.0
CA D:ASP618 3.9 0.7 1.0
N D:ASP465 4.0 0.0 1.0
N D:ILE464 4.0 0.5 1.0
CA D:ASP465 4.1 0.8 1.0
CE D:LYS616 4.2 0.7 1.0
OD2 D:ASP465 4.2 0.3 1.0
CB D:ASP465 4.3 0.9 1.0
C D:LYS616 4.3 0.3 1.0
C D:ASP463 4.4 0.0 1.0
N D:MET617 4.4 0.6 1.0
CA D:ILE464 4.4 0.9 1.0
O D:MET617 4.5 0.7 1.0
NZ D:LYS616 4.6 0.4 1.0
CB D:ASP463 4.6 0.8 1.0
CA D:ASP463 4.7 0.6 1.0
O D:ASP618 4.8 0.7 1.0
CD D:LYS616 4.8 0.2 1.0
CB D:MET617 4.9 0.1 1.0
C D:ASP618 4.9 0.7 1.0
CG D:LYS616 4.9 0.0 1.0
CE D:MET617 4.9 0.7 1.0
O D:ASP463 5.0 1.0 1.0

Reference:

B.Liu, J.Lin, T.A.Steitz. Structure of Poliiialpha-Tauc-Dna Complex Suggests An Atomic Model of the Replisome Structure V. 21 658 2013.
ISSN: ISSN 0969-2126
PubMed: 23478062
DOI: 10.1016/J.STR.2013.02.002
Page generated: Fri Aug 16 16:58:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy