Magnesium in PDB 4ix4: Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp

The structure of Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp, PDB code: 4ix4 was solved by J.Guo, X.Wei, M.Li, X.Pan, W.Chang, Z.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.64 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.930, 133.027, 55.155, 90.00, 116.48, 90.00
R / Rfree (%)	15.7 / 19.9

The binding sites of Magnesium atom in the Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp (pdb code 4ix4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp, PDB code: 4ix4:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:27.9 occ:1.00 O3B A:ADP601 2.0 30.0 1.0 O1A A:ADP601 2.2 23.1 1.0 O A:HOH887 2.2 37.8 1.0 OD2 A:ASP338 2.2 25.3 1.0 OD1 A:ASN323 2.3 13.0 1.0 O A:HOH906 2.5 24.9 1.0 CG A:ASP338 3.1 19.1 1.0 CG A:ASN323 3.2 10.0 1.0 PB A:ADP601 3.3 32.1 1.0 ND2 A:ASN323 3.4 11.3 1.0 CB A:ASP338 3.4 12.9 1.0 PA A:ADP601 3.4 21.6 1.0 O A:HOH872 3.6 26.9 1.0 O3A A:ADP601 3.7 24.7 1.0 O A:HOH1039 3.9 40.1 1.0 O2B A:ADP601 4.1 35.7 1.0 O B:HOH839 4.2 41.1 1.0 OD1 A:ASP338 4.3 20.4 1.0 O2A A:ADP601 4.3 25.6 1.0 O A:HOH993 4.4 58.4 1.0 OD1 A:ASP318 4.4 12.9 1.0 O1B A:ADP601 4.5 32.0 1.0 O5' A:ADP601 4.6 20.8 1.0 CB A:ASN323 4.6 10.5 1.0 O A:HOH961 4.7 39.2 1.0 O A:HOH1032 4.8 31.7 1.0 CE A:LYS320 4.8 15.0 1.0 O3' A:ADP601 4.9 23.9 1.0 O A:ALA322 4.9 14.4 1.0 CA A:ASP338 4.9 9.6 1.0 CD1 A:ILE337 4.9 13.5 1.0 C5' A:ADP601 4.9 19.2 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:15.0 occ:1.00 O A:HOH885 2.1 16.1 1.0 O B:HOH854 2.1 14.4 1.0 O A:HOH889 2.1 15.5 1.0 O A:HOH886 2.1 13.9 1.0 O B:HOH847 2.2 16.5 1.0 O A:HOH888 2.2 16.4 1.0 OE1 B:GLU255 3.9 18.1 1.0 O A:HOH732 3.9 16.6 1.0 O B:HOH763 4.0 18.3 1.0 OE2 A:GLU422 4.1 18.8 1.0 O B:HOH732 4.1 16.7 1.0 O B:HOH720 4.2 17.3 1.0 OD2 A:ASP418 4.2 15.0 1.0 O B:HOH722 4.3 14.9 1.0 CB A:ASP418 4.3 13.8 1.0 O A:HOH835 4.3 25.0 1.0 O B:HOH744 4.3 19.6 1.0 OE1 A:GLU422 4.4 20.1 1.0 CB B:ALA204 4.6 13.8 1.0 CD A:GLU422 4.7 17.8 1.0 CD B:GLU255 4.7 17.2 1.0 CG A:ASP418 4.8 13.2 1.0 OE2 B:GLU255 4.8 19.9 1.0 CA B:ALA204 5.0 13.6 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A STT7 Homolog From Micromonas Algae in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:50.1 occ:1.00 O1A B:ADP601 2.3 39.1 1.0 O B:HOH911 2.4 45.1 1.0 O B:HOH924 2.4 46.6 1.0 O1B B:ADP601 2.4 37.0 1.0 OD2 B:ASP338 2.5 33.7 1.0 O B:HOH898 2.6 43.4 1.0 PA B:ADP601 3.4 36.0 1.0 PB B:ADP601 3.7 35.5 1.0 O3A B:ADP601 3.7 36.8 1.0 CG B:ASP338 3.7 28.0 1.0 O B:HOH935 3.9 37.4 1.0 OD1 B:ASN323 4.0 18.1 1.0 O2A B:ADP601 4.1 37.3 1.0 OD2 B:ASP318 4.3 19.4 1.0 O B:HOH846 4.4 30.4 1.0 O2B B:ADP601 4.5 36.3 1.0 OD1 B:ASP338 4.5 28.3 1.0 CB B:ASP338 4.6 18.2 1.0 ND2 B:ASN323 4.6 16.7 1.0 O B:HOH991 4.6 38.0 1.0 O5' B:ADP601 4.7 34.5 1.0 CG B:ASN323 4.8 14.6 1.0 O3B B:ADP601 4.8 38.1 1.0 O B:HOH976 4.8 38.1 1.0 NZ B:LYS320 4.8 18.7 1.0 O B:HOH818 4.9 27.5 1.0 O B:HOH925 4.9 40.7 1.0

J.Guo, X.Wei, M.Li, X.Pan, W.Chang, Z.Liu. Structure of the Catalytic Domain of A State Transition Kinase Homolog From Micromonas Algae Protein Cell V. 4 607 2013.
ISSN: ISSN 1674-800X
PubMed: 23794031
DOI: 10.1007/S13238-013-3034-9