Magnesium in PDB 4ixq: Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Enzymatic activity of Rt Fs X-Ray Diffraction of Photosystem II, Dark State
All present enzymatic activity of Rt Fs X-Ray Diffraction of Photosystem II, Dark State:
1.10.3.9;
Protein crystallography data
The structure of Rt Fs X-Ray Diffraction of Photosystem II, Dark State, PDB code: 4ixq
was solved by
J.Kern,
R.Alonso-Mori,
R.Tran,
J.Hattne,
R.J.Gildea,
N.Echols,
C.Gloeckner,
J.Hellmich,
H.Laksmono,
R.G.Sierra,
B.Lassalle-Kaiser,
S.Koroidov,
A.Lampe,
G.Han,
S.Gul,
D.Difiore,
D.Milathianaki,
A.R.Fry,
A.Miahnahri,
D.W.Schafer,
M.Messerschmidt,
M.M.Seibert,
J.E.Koglin,
D.Sokaras,
T.-C.Weng,
J.Sellberg,
M.J.Latimer,
R.W.Grosse-Kunstleve,
P.H.Zwart,
W.E.White,
P.Glatzel,
P.D.Adams,
M.J.Bogan,
G.J.Williams,
S.Boutet,
J.Messinger,
A.Zouni,
N.K.Sauter,
V.K.Yachandra,
U.Bergmann,
J.Yano,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
82.94 /
5.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
131.864,
227.511,
307.219,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
27.7 /
31.4
|
Other elements in 4ixq:
The structure of Rt Fs X-Ray Diffraction of Photosystem II, Dark State also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 1 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:53.3
occ:1.00
|
MG
|
A:CLA403
|
0.0
|
53.3
|
1.0
|
NB
|
A:CLA403
|
2.0
|
60.8
|
1.0
|
ND
|
A:CLA403
|
2.0
|
51.9
|
1.0
|
NC
|
A:CLA403
|
2.1
|
52.2
|
1.0
|
NA
|
A:CLA403
|
2.1
|
65.8
|
1.0
|
C4D
|
A:CLA403
|
2.9
|
55.4
|
1.0
|
NE2
|
A:HIS198
|
3.0
|
58.4
|
1.0
|
C1B
|
A:CLA403
|
3.0
|
61.1
|
1.0
|
C4A
|
A:CLA403
|
3.0
|
67.6
|
1.0
|
C1C
|
A:CLA403
|
3.1
|
54.5
|
1.0
|
C4B
|
A:CLA403
|
3.1
|
58.0
|
1.0
|
C4C
|
A:CLA403
|
3.1
|
52.1
|
1.0
|
C1A
|
A:CLA403
|
3.2
|
63.9
|
1.0
|
C1D
|
A:CLA403
|
3.2
|
52.2
|
1.0
|
CHB
|
A:CLA403
|
3.4
|
64.1
|
1.0
|
CHC
|
A:CLA403
|
3.4
|
56.5
|
1.0
|
CHA
|
A:CLA403
|
3.5
|
56.0
|
1.0
|
CHD
|
A:CLA403
|
3.5
|
54.6
|
1.0
|
CE1
|
A:HIS198
|
3.9
|
61.5
|
1.0
|
CD2
|
A:HIS198
|
4.0
|
61.3
|
1.0
|
CAB
|
D:CLA401
|
4.2
|
60.5
|
1.0
|
C3D
|
A:CLA403
|
4.3
|
51.6
|
1.0
|
C2B
|
A:CLA403
|
4.3
|
55.1
|
1.0
|
C2C
|
A:CLA403
|
4.3
|
54.8
|
1.0
|
C3B
|
A:CLA403
|
4.3
|
55.9
|
1.0
|
C3C
|
A:CLA403
|
4.4
|
55.1
|
1.0
|
C2D
|
A:CLA403
|
4.4
|
54.5
|
1.0
|
C3A
|
A:CLA403
|
4.4
|
67.3
|
1.0
|
C2A
|
A:CLA403
|
4.5
|
66.7
|
1.0
|
CBB
|
D:CLA401
|
4.8
|
58.4
|
1.0
|
SD
|
A:MET183
|
4.9
|
65.1
|
1.0
|
CBD
|
A:CLA403
|
4.9
|
56.2
|
1.0
|
|
Magnesium binding site 2 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 2 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:53.2
occ:1.00
|
MG
|
A:CLA404
|
0.0
|
53.2
|
1.0
|
NB
|
A:CLA404
|
2.0
|
48.7
|
1.0
|
ND
|
A:CLA404
|
2.0
|
48.6
|
1.0
|
NC
|
A:CLA404
|
2.1
|
52.0
|
1.0
|
NA
|
A:CLA404
|
2.1
|
56.4
|
1.0
|
C4D
|
A:CLA404
|
2.9
|
55.0
|
1.0
|
C1B
|
A:CLA404
|
3.0
|
46.4
|
1.0
|
C4A
|
A:CLA404
|
3.1
|
56.3
|
1.0
|
C4B
|
A:CLA404
|
3.1
|
44.8
|
1.0
|
C1C
|
A:CLA404
|
3.1
|
53.0
|
1.0
|
C4C
|
A:CLA404
|
3.2
|
52.3
|
1.0
|
C1A
|
A:CLA404
|
3.2
|
55.8
|
1.0
|
C1D
|
A:CLA404
|
3.2
|
51.8
|
1.0
|
CHB
|
A:CLA404
|
3.4
|
52.4
|
1.0
|
CHC
|
A:CLA404
|
3.4
|
50.9
|
1.0
|
CHA
|
A:CLA404
|
3.5
|
54.0
|
1.0
|
CHD
|
A:CLA404
|
3.6
|
52.0
|
1.0
|
CBB
|
D:PHO402
|
4.2
|
61.7
|
1.0
|
C3D
|
A:CLA404
|
4.3
|
46.1
|
1.0
|
C2B
|
A:CLA404
|
4.3
|
44.5
|
1.0
|
C3B
|
A:CLA404
|
4.3
|
47.5
|
1.0
|
C2C
|
A:CLA404
|
4.3
|
51.1
|
1.0
|
C3C
|
A:CLA404
|
4.4
|
50.0
|
1.0
|
C2D
|
A:CLA404
|
4.4
|
50.7
|
1.0
|
C3A
|
A:CLA404
|
4.4
|
59.9
|
1.0
|
O1A
|
A:CLA404
|
4.4
|
58.4
|
1.0
|
C2A
|
A:CLA404
|
4.5
|
60.0
|
1.0
|
C20
|
D:PHO402
|
4.8
|
48.6
|
1.0
|
CG2
|
A:THR179
|
4.8
|
48.8
|
1.0
|
CBD
|
A:CLA404
|
4.9
|
48.9
|
1.0
|
|
Magnesium binding site 3 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 3 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:56.3
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
56.3
|
1.0
|
NB
|
A:CLA405
|
2.0
|
64.6
|
1.0
|
ND
|
A:CLA405
|
2.0
|
63.3
|
1.0
|
NC
|
A:CLA405
|
2.1
|
54.6
|
1.0
|
NA
|
A:CLA405
|
2.1
|
65.9
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
63.5
|
1.0
|
C1B
|
A:CLA405
|
3.0
|
70.5
|
1.0
|
C4B
|
A:CLA405
|
3.1
|
63.1
|
1.0
|
C4A
|
A:CLA405
|
3.1
|
70.7
|
1.0
|
C1C
|
A:CLA405
|
3.1
|
53.8
|
1.0
|
C4C
|
A:CLA405
|
3.1
|
54.2
|
1.0
|
C1A
|
A:CLA405
|
3.2
|
61.3
|
1.0
|
C1D
|
A:CLA405
|
3.2
|
62.4
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
73.9
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
57.2
|
1.0
|
CHA
|
A:CLA405
|
3.5
|
60.4
|
1.0
|
CHD
|
A:CLA405
|
3.5
|
57.3
|
1.0
|
CBB
|
A:PHO406
|
4.1
|
64.9
|
1.0
|
C3D
|
A:CLA405
|
4.3
|
63.7
|
1.0
|
C2B
|
A:CLA405
|
4.3
|
70.5
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
70.6
|
1.0
|
C2C
|
A:CLA405
|
4.3
|
52.4
|
1.0
|
C2D
|
A:CLA405
|
4.4
|
64.8
|
1.0
|
C3C
|
A:CLA405
|
4.4
|
50.1
|
1.0
|
C3A
|
A:CLA405
|
4.4
|
67.0
|
1.0
|
C2A
|
A:CLA405
|
4.5
|
62.3
|
1.0
|
C20
|
A:PHO406
|
4.5
|
65.2
|
1.0
|
CBA
|
A:CLA405
|
4.8
|
75.6
|
1.0
|
CE1
|
A:PHE206
|
4.9
|
69.0
|
1.0
|
CBD
|
A:CLA405
|
4.9
|
59.1
|
1.0
|
CG2
|
D:ILE178
|
5.0
|
64.6
|
1.0
|
|
Magnesium binding site 4 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 4 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg407
b:65.1
occ:1.00
|
MG
|
A:CLA407
|
0.0
|
65.1
|
1.0
|
NB
|
A:CLA407
|
2.0
|
69.1
|
1.0
|
ND
|
A:CLA407
|
2.0
|
62.1
|
1.0
|
NC
|
A:CLA407
|
2.1
|
64.5
|
1.0
|
NA
|
A:CLA407
|
2.1
|
57.9
|
1.0
|
NE2
|
A:HIS118
|
2.8
|
63.1
|
1.0
|
C4D
|
A:CLA407
|
2.9
|
64.1
|
1.0
|
C1B
|
A:CLA407
|
3.0
|
65.9
|
1.0
|
C4A
|
A:CLA407
|
3.0
|
59.4
|
1.0
|
C4B
|
A:CLA407
|
3.1
|
70.6
|
1.0
|
C1C
|
A:CLA407
|
3.1
|
61.5
|
1.0
|
C4C
|
A:CLA407
|
3.1
|
63.1
|
1.0
|
C1A
|
A:CLA407
|
3.2
|
63.6
|
1.0
|
C1D
|
A:CLA407
|
3.2
|
62.9
|
1.0
|
CHB
|
A:CLA407
|
3.4
|
61.4
|
1.0
|
CHC
|
A:CLA407
|
3.4
|
65.7
|
1.0
|
CHA
|
A:CLA407
|
3.5
|
65.5
|
1.0
|
CHD
|
A:CLA407
|
3.5
|
64.4
|
1.0
|
CE1
|
A:HIS118
|
3.6
|
59.7
|
1.0
|
CD2
|
A:HIS118
|
3.8
|
67.1
|
1.0
|
C3D
|
A:CLA407
|
4.3
|
64.7
|
1.0
|
CG2
|
I:VAL12
|
4.3
|
69.6
|
1.0
|
C2B
|
A:CLA407
|
4.3
|
70.3
|
1.0
|
C3B
|
A:CLA407
|
4.3
|
72.3
|
1.0
|
C2C
|
A:CLA407
|
4.3
|
58.1
|
1.0
|
C2D
|
A:CLA407
|
4.4
|
64.3
|
1.0
|
CG1
|
I:VAL8
|
4.4
|
68.3
|
1.0
|
C3C
|
A:CLA407
|
4.4
|
62.0
|
1.0
|
C3A
|
A:CLA407
|
4.4
|
63.5
|
1.0
|
C2A
|
A:CLA407
|
4.5
|
67.0
|
1.0
|
ND1
|
A:HIS118
|
4.8
|
64.2
|
1.0
|
CG
|
A:HIS118
|
4.9
|
68.1
|
1.0
|
CBD
|
A:CLA407
|
4.9
|
67.7
|
1.0
|
|
Magnesium binding site 5 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 5 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:0.8
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
0.8
|
1.0
|
NB
|
B:CLA601
|
2.0
|
1.0
|
1.0
|
ND
|
B:CLA601
|
2.0
|
0.7
|
1.0
|
NA
|
B:CLA601
|
2.1
|
99.5
|
1.0
|
NC
|
B:CLA601
|
2.1
|
0.8
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
0.3
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
0.6
|
1.0
|
C4A
|
B:CLA601
|
3.1
|
0.5
|
1.0
|
C4B
|
B:CLA601
|
3.1
|
0.7
|
1.0
|
C1C
|
B:CLA601
|
3.1
|
0.6
|
1.0
|
C1A
|
B:CLA601
|
3.2
|
0.8
|
1.0
|
C4C
|
B:CLA601
|
3.2
|
0.4
|
1.0
|
C1D
|
B:CLA601
|
3.2
|
0.4
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
0.7
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
0.0
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
0.5
|
1.0
|
CHD
|
B:CLA601
|
3.6
|
0.8
|
1.0
|
O
|
B:TRP185
|
3.9
|
89.7
|
1.0
|
C3D
|
B:CLA601
|
4.3
|
0.5
|
1.0
|
C2B
|
B:CLA601
|
4.3
|
0.4
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
0.8
|
1.0
|
C2C
|
B:CLA601
|
4.3
|
0.3
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
0.5
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
0.0
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
98.8
|
1.0
|
C2A
|
B:CLA601
|
4.5
|
0.1
|
1.0
|
CE1
|
B:PHE190
|
4.8
|
96.1
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
0.7
|
1.0
|
|
Magnesium binding site 6 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 6 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:92.7
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
92.7
|
1.0
|
NB
|
B:CLA602
|
2.0
|
92.4
|
1.0
|
ND
|
B:CLA602
|
2.0
|
91.3
|
1.0
|
NA
|
B:CLA602
|
2.1
|
96.7
|
1.0
|
NC
|
B:CLA602
|
2.1
|
96.3
|
1.0
|
ND1
|
B:HIS201
|
2.9
|
80.2
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
90.9
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
91.3
|
1.0
|
C4A
|
B:CLA602
|
3.1
|
93.8
|
1.0
|
C4B
|
B:CLA602
|
3.1
|
95.2
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
99.2
|
1.0
|
C1A
|
B:CLA602
|
3.2
|
97.2
|
1.0
|
C4C
|
B:CLA602
|
3.2
|
92.4
|
1.0
|
C1D
|
B:CLA602
|
3.2
|
91.3
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
89.3
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
97.7
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
93.4
|
1.0
|
CHD
|
B:CLA602
|
3.6
|
90.1
|
1.0
|
CE1
|
B:HIS201
|
3.7
|
81.6
|
1.0
|
CZ
|
H:PHE41
|
3.8
|
98.3
|
1.0
|
CG
|
B:HIS201
|
3.9
|
77.4
|
1.0
|
CB
|
B:HIS201
|
4.1
|
79.7
|
1.0
|
C3D
|
B:CLA602
|
4.3
|
88.0
|
1.0
|
C2B
|
B:CLA602
|
4.3
|
93.3
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
96.2
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
96.8
|
1.0
|
C2D
|
B:CLA602
|
4.4
|
91.0
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
91.0
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
94.4
|
1.0
|
C2A
|
B:CLA602
|
4.5
|
94.6
|
1.0
|
CE1
|
H:PHE41
|
4.6
|
0.8
|
1.0
|
CA
|
B:HIS201
|
4.7
|
81.2
|
1.0
|
CE2
|
H:PHE41
|
4.7
|
96.4
|
1.0
|
CE2
|
B:PHE190
|
4.7
|
95.4
|
1.0
|
NE2
|
B:HIS201
|
4.9
|
78.5
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
89.3
|
1.0
|
CD2
|
B:HIS201
|
5.0
|
76.5
|
1.0
|
|
Magnesium binding site 7 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 7 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:77.0
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
77.0
|
1.0
|
NB
|
B:CLA603
|
2.0
|
81.9
|
1.0
|
ND
|
B:CLA603
|
2.0
|
78.7
|
1.0
|
NA
|
B:CLA603
|
2.1
|
73.9
|
1.0
|
NC
|
B:CLA603
|
2.1
|
85.7
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
75.2
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
80.9
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
79.9
|
1.0
|
C4B
|
B:CLA603
|
3.1
|
84.5
|
1.0
|
C1C
|
B:CLA603
|
3.1
|
82.2
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
84.1
|
1.0
|
C1D
|
B:CLA603
|
3.2
|
81.0
|
1.0
|
C1A
|
B:CLA603
|
3.2
|
74.1
|
1.0
|
NE2
|
B:HIS202
|
3.2
|
78.4
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
80.5
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
84.3
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
71.6
|
1.0
|
CHD
|
B:CLA603
|
3.5
|
84.7
|
1.0
|
CD2
|
B:HIS202
|
3.8
|
76.3
|
1.0
|
C7
|
B:CLA605
|
3.9
|
84.2
|
1.0
|
C5
|
B:CLA605
|
4.0
|
81.4
|
1.0
|
CE1
|
B:HIS202
|
4.2
|
79.2
|
1.0
|
C3D
|
B:CLA603
|
4.3
|
74.1
|
1.0
|
C2B
|
B:CLA603
|
4.3
|
84.5
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
86.8
|
1.0
|
C2C
|
B:CLA603
|
4.4
|
77.3
|
1.0
|
C2D
|
B:CLA603
|
4.4
|
76.5
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
78.5
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
82.8
|
1.0
|
C2A
|
B:CLA603
|
4.5
|
77.3
|
1.0
|
C6
|
B:CLA605
|
4.6
|
80.1
|
1.0
|
NE2
|
B:HIS201
|
4.8
|
78.5
|
1.0
|
O2A
|
B:CLA603
|
4.9
|
75.3
|
1.0
|
CBA
|
B:CLA603
|
4.9
|
78.6
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
65.9
|
1.0
|
|
Magnesium binding site 8 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 8 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:61.6
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
61.6
|
1.0
|
NB
|
B:CLA604
|
2.0
|
57.3
|
1.0
|
ND
|
B:CLA604
|
2.0
|
64.8
|
1.0
|
NA
|
B:CLA604
|
2.1
|
59.6
|
1.0
|
NC
|
B:CLA604
|
2.1
|
62.0
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
65.4
|
1.0
|
NE2
|
B:HIS455
|
3.0
|
58.0
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
57.5
|
1.0
|
C4A
|
B:CLA604
|
3.1
|
60.0
|
1.0
|
C4B
|
B:CLA604
|
3.1
|
56.2
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
57.9
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
68.8
|
1.0
|
C4C
|
B:CLA604
|
3.2
|
66.2
|
1.0
|
C1A
|
B:CLA604
|
3.2
|
61.3
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
59.5
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
55.7
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
64.4
|
1.0
|
CHD
|
B:CLA604
|
3.5
|
71.0
|
1.0
|
CD2
|
B:HIS455
|
3.6
|
62.6
|
1.0
|
CE1
|
B:HIS455
|
3.9
|
61.1
|
1.0
|
C14
|
B:CLA612
|
4.0
|
67.0
|
1.0
|
C3D
|
B:CLA604
|
4.3
|
65.6
|
1.0
|
C2B
|
B:CLA604
|
4.3
|
55.2
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
55.2
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
67.5
|
1.0
|
C2C
|
B:CLA604
|
4.4
|
56.4
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
61.2
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
60.0
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
60.4
|
1.0
|
C15
|
B:CLA612
|
4.6
|
65.0
|
1.0
|
C13
|
B:CLA612
|
4.7
|
63.9
|
1.0
|
CG
|
B:HIS455
|
4.7
|
67.3
|
1.0
|
ND1
|
B:HIS455
|
4.9
|
65.4
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
69.2
|
1.0
|
|
Magnesium binding site 9 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 9 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:68.8
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
68.8
|
1.0
|
NB
|
B:CLA605
|
2.0
|
73.6
|
1.0
|
ND
|
B:CLA605
|
2.0
|
68.9
|
1.0
|
NC
|
B:CLA605
|
2.1
|
76.2
|
1.0
|
NA
|
B:CLA605
|
2.1
|
70.5
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
67.6
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
79.0
|
1.0
|
NE2
|
B:HIS100
|
3.0
|
68.3
|
1.0
|
C4A
|
B:CLA605
|
3.0
|
74.0
|
1.0
|
C4B
|
B:CLA605
|
3.1
|
77.3
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
81.4
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
79.7
|
1.0
|
C1D
|
B:CLA605
|
3.1
|
73.4
|
1.0
|
C1A
|
B:CLA605
|
3.1
|
70.1
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
78.4
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
81.6
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
66.8
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
75.5
|
1.0
|
CD2
|
B:HIS100
|
3.7
|
69.3
|
1.0
|
C2
|
B:CLA604
|
4.0
|
86.5
|
1.0
|
CE1
|
B:HIS100
|
4.0
|
71.3
|
1.0
|
C1
|
B:CLA604
|
4.2
|
84.4
|
1.0
|
C3D
|
B:CLA605
|
4.3
|
70.2
|
1.0
|
C2B
|
B:CLA605
|
4.3
|
83.1
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
81.9
|
1.0
|
C2C
|
B:CLA605
|
4.3
|
89.0
|
1.0
|
C2D
|
B:CLA605
|
4.3
|
75.4
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
85.3
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
74.0
|
1.0
|
C2A
|
B:CLA605
|
4.5
|
72.7
|
1.0
|
C3
|
B:CLA604
|
4.8
|
88.4
|
1.0
|
O2A
|
B:CLA604
|
4.8
|
76.7
|
1.0
|
O1A
|
B:CLA604
|
4.8
|
68.3
|
1.0
|
CG
|
B:HIS100
|
4.9
|
69.6
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
67.0
|
1.0
|
CBA
|
B:CLA605
|
4.9
|
76.6
|
1.0
|
|
Magnesium binding site 10 out
of 70 in 4ixq
Go back to
Magnesium Binding Sites List in 4ixq
Magnesium binding site 10 out
of 70 in the Rt Fs X-Ray Diffraction of Photosystem II, Dark State
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Rt Fs X-Ray Diffraction of Photosystem II, Dark State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:96.3
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
96.3
|
1.0
|
NB
|
B:CLA606
|
2.0
|
79.6
|
1.0
|
ND
|
B:CLA606
|
2.0
|
88.7
|
1.0
|
NA
|
B:CLA606
|
2.1
|
75.2
|
1.0
|
NC
|
B:CLA606
|
2.1
|
88.7
|
1.0
|
ND1
|
B:HIS157
|
2.9
|
80.6
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
87.9
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
77.1
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
71.7
|
1.0
|
C4B
|
B:CLA606
|
3.1
|
83.0
|
1.0
|
C1C
|
B:CLA606
|
3.1
|
91.6
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
92.4
|
1.0
|
C1D
|
B:CLA606
|
3.2
|
91.7
|
1.0
|
C1A
|
B:CLA606
|
3.2
|
76.9
|
1.0
|
CE1
|
B:HIS157
|
3.4
|
77.3
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
74.0
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
88.6
|
1.0
|
CHA
|
B:CLA606
|
3.5
|
83.1
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
92.6
|
1.0
|
C6
|
B:LMT623
|
3.9
|
82.0
|
1.0
|
C4
|
B:LMT623
|
4.0
|
87.0
|
1.0
|
C5
|
B:LMT623
|
4.0
|
86.2
|
1.0
|
CG
|
B:HIS157
|
4.2
|
81.8
|
1.0
|
C3D
|
B:CLA606
|
4.3
|
94.8
|
1.0
|
C2B
|
B:CLA606
|
4.3
|
80.0
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
83.6
|
1.0
|
C2C
|
B:CLA606
|
4.3
|
97.7
|
1.0
|
C2D
|
B:CLA606
|
4.4
|
95.4
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
96.2
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
70.2
|
1.0
|
C2A
|
B:CLA606
|
4.5
|
72.5
|
1.0
|
NE2
|
B:HIS157
|
4.6
|
76.7
|
1.0
|
CB
|
B:HIS157
|
4.7
|
84.7
|
1.0
|
C3
|
B:LMT623
|
4.9
|
92.6
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
86.5
|
1.0
|
|
Reference:
J.Kern,
R.Alonso-Mori,
R.Tran,
J.Hattne,
R.J.Gildea,
N.Echols,
C.Glockner,
J.Hellmich,
H.Laksmono,
R.G.Sierra,
B.Lassalle-Kaiser,
S.Koroidov,
A.Lampe,
G.Han,
S.Gul,
D.Difiore,
D.Milathianaki,
A.R.Fry,
A.Miahnahri,
D.W.Schafer,
M.Messerschmidt,
M.M.Seibert,
J.E.Koglin,
D.Sokaras,
T.C.Weng,
J.Sellberg,
M.J.Latimer,
R.W.Grosse-Kunstleve,
P.H.Zwart,
W.E.White,
P.Glatzel,
P.D.Adams,
M.J.Bogan,
G.J.Williams,
S.Boutet,
J.Messinger,
A.Zouni,
N.K.Sauter,
V.K.Yachandra,
U.Bergmann,
J.Yano.
Simultaneous Femtosecond X-Ray Spectroscopy and Diffraction of Photosystem II at Room Temperature. Science V. 340 491 2013.
ISSN: ISSN 0036-8075
PubMed: 23413188
DOI: 10.1126/SCIENCE.1234273
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