Magnesium in PDB 4jiw: C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5

Enzymatic activity of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5

All present enzymatic activity of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5:
3.2.1.17;

Protein crystallography data

The structure of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5, PDB code: 4jiw was solved by S.A.Buth, P.G.Leiman, M.M.Shneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.57 / 3.40
*Space group*	P 6₁ 2 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	184.157, 184.157, 238.893, 90.00, 90.00, 120.00
*R / R_free (%)*	18.4 / 24.3

Other elements in 4jiw:

The structure of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5 also contains other interesting chemical elements:

Chlorine	(Cl)	3 atoms
Zinc	(Zn)	4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5 (pdb code 4jiw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5, PDB code: 4jiw:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4jiw

Go back to

Magnesium Binding Sites List in 4jiw

Magnesium binding site 1 out of 4 in the C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg601 b:0.3 occ:1.00	O	A:HOH602	2.1	85.3	1.0
	O	B:HOH702	2.1	0.3	1.0
	O	A:HOH601	2.1	0.5	1.0
	O	C:HOH602	2.1	0.4	1.0
	O	C:HOH601	2.1	88.8	1.0
	O	B:HOH701	2.1	0.5	1.0
	OE1	C:GLU552	3.6	0.2	1.0
	OE2	A:GLU552	3.9	1.0	1.0
	OE1	B:GLU552	4.1	0.7	1.0
	OE2	C:GLU552	4.2	0.1	1.0
	CD	C:GLU552	4.3	0.7	1.0
	OE2	B:GLU552	4.6	0.3	1.0
	CD	B:GLU552	4.8	0.6	1.0
	CD	A:GLU552	4.8	0.8	1.0
	OE1	A:GLU552	4.8	0.9	1.0
	CE	B:MET557	4.8	0.2	1.0
	CE	C:MET557	4.9	0.9	1.0

Magnesium binding site 2 out of 4 in 4jiw

Go back to

Magnesium Binding Sites List in 4jiw

Magnesium binding site 2 out of 4 in the C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
F:Mg601 b:0.5 occ:1.00	O	G:HOH602	2.1	0.6	1.0
	O	F:HOH701	2.1	0.1	1.0
	O	E:HOH701	2.1	0.8	1.0
	O	F:HOH702	2.1	99.0	1.0
	O	E:HOH702	2.1	0.7	1.0
	O	G:HOH601	2.1	0.4	1.0
	OE2	F:GLU552	3.7	0.1	1.0
	OE1	G:GLU552	3.8	0.3	1.0
	OE2	G:GLU552	4.3	0.7	1.0
	OE1	E:GLU552	4.4	0.9	1.0
	CD	G:GLU552	4.4	0.6	1.0
	OE1	F:GLU552	4.5	0.4	1.0
	CE	E:MET557	4.5	0.8	1.0
	CD	F:GLU552	4.5	0.3	1.0
	CE	F:MET557	4.6	0.7	1.0
	OE2	E:GLU552	4.8	0.7	1.0
	CE	G:MET557	4.9	0.4	1.0

Magnesium binding site 3 out of 4 in 4jiw

Go back to

Magnesium Binding Sites List in 4jiw

Magnesium binding site 3 out of 4 in the C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
I:Mg601 b:0.1 occ:1.00	O	I:HOH702	2.1	88.2	1.0
	O	J:HOH602	2.1	82.4	1.0
	O	I:HOH701	2.1	0.3	1.0
	O	K:HOH601	2.1	85.1	1.0
	O	K:HOH602	2.1	0.3	1.0
	O	J:HOH601	2.1	0.6	1.0
	OE1	I:GLU552	3.9	0.5	1.0
	OE1	K:GLU552	3.9	0.2	1.0
	OE2	J:GLU552	4.3	0.5	1.0
	OE2	I:GLU552	4.5	0.3	1.0
	OE2	K:GLU552	4.5	0.4	1.0
	CE	K:MET557	4.6	0.6	1.0
	OE1	J:GLU552	4.6	0.2	1.0
	CD	I:GLU552	4.6	0.8	1.0
	CD	K:GLU552	4.6	0.0	1.0
	CD	J:GLU552	4.9	0.8	1.0
	CE	I:MET557	4.9	0.8	1.0

Magnesium binding site 4 out of 4 in 4jiw

Go back to

Magnesium Binding Sites List in 4jiw

Magnesium binding site 4 out of 4 in the C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of C1882 Paar-Repeat Protein From Escherichia Coli in Complex with A Vgrg-Like Beta-Helix That Is Based on A Fragment of T4 GP5 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
O:Mg601 b:0.0 occ:1.00	O	O:HOH701	2.1	0.3	1.0
	O	N:HOH601	2.1	1.0	1.0
	O	O:HOH703	2.1	0.8	1.0
	O	M:HOH701	2.1	0.7	1.0
	O	N:HOH602	2.1	79.0	1.0
	O	O:HOH702	2.1	0.6	1.0
	OE2	O:GLU552	3.4	0.7	1.0
	OE1	O:GLU552	4.2	0.7	1.0
	CE	O:MET557	4.2	0.4	1.0
	OE2	M:GLU552	4.2	0.3	1.0
	CD	O:GLU552	4.2	0.8	1.0
	OE1	N:GLU552	4.3	0.2	1.0
	OE1	M:GLU552	4.6	0.4	1.0
	OE2	N:GLU552	4.8	0.8	1.0
	CD	M:GLU552	4.8	1.0	1.0
	CD	N:GLU552	4.9	0.7	1.0

Reference:

M.M.Shneider, S.A.Buth, B.T.Ho, M.Basler, J.J.Mekalanos, P.G.Leiman. Paar-Repeat Proteins Sharpen and Diversify the Type VI Secretion System Spike. Nature V. 500 350 2013.
ISSN: ISSN 0028-0836
PubMed: 23925114
DOI: 10.1038/NATURE12453

Page generated: Sat Aug 17 02:19:16 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy