Magnesium in PDB 4jlz: Structure of Porcine Cgas in Complex with Bound Utp

The structure of Structure of Porcine Cgas in Complex with Bound Utp, PDB code: 4jlz was solved by F.Civril, K.P.Hopfner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.56 / 2.27
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	80.560, 97.693, 106.959, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 20.7

The structure of Structure of Porcine Cgas in Complex with Bound Utp also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Structure of Porcine Cgas in Complex with Bound Utp (pdb code 4jlz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Porcine Cgas in Complex with Bound Utp, PDB code: 4jlz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Porcine Cgas in Complex with Bound Utp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Porcine Cgas in Complex with Bound Utp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:36.5 occ:1.00 O3G A:UTP503 2.1 37.9 0.8 O1A A:UTP503 2.1 27.0 0.7 O A:HOH743 2.3 47.3 1.0 O2B A:UTP503 2.3 23.4 0.8 OD2 A:ASP202 2.3 34.5 0.7 OD1 A:ASP202 2.5 41.0 0.7 O A:HOH649 2.6 38.4 1.0 CG A:ASP202 2.8 28.2 0.7 PB A:UTP503 3.3 31.6 0.7 PA A:UTP503 3.4 30.6 0.6 PG A:UTP503 3.4 45.0 0.8 O3B A:UTP503 3.7 92.7 0.9 O3A A:UTP503 3.8 54.6 0.8 CB A:ASP202 3.9 21.8 0.3 O A:HOH722 4.1 45.2 1.0 O A:HOH749 4.2 61.7 1.0 OD2 A:ASP202 4.2 32.0 0.3 O1G A:UTP503 4.2 46.2 0.8 CB A:ASP202 4.3 21.0 0.7 O2A A:UTP503 4.3 32.3 0.7 O A:HOH633 4.3 30.6 1.0 O A:HOH631 4.3 25.9 1.0 O5' A:UTP503 4.3 49.9 0.8 C5' A:UTP503 4.3 56.2 1.0 N A:SER188 4.4 20.7 1.0 CG A:ASP202 4.4 23.7 0.3 O2G A:UTP503 4.5 51.9 0.9 CA A:GLY187 4.5 17.1 1.0 OG A:SER188 4.5 23.9 1.0 O A:HOH706 4.5 35.6 1.0 O1B A:UTP503 4.5 30.6 0.8 C A:GLY187 5.0 20.1 1.0 O A:ASP202 5.0 23.1 0.3

Magnesium binding site 2 out of 2 in the Structure of Porcine Cgas in Complex with Bound Utp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Porcine Cgas in Complex with Bound Utp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:37.9 occ:1.00 O1A B:UTP503 2.0 43.3 1.0 O2G B:UTP503 2.3 28.1 1.0 O2B B:UTP503 2.3 24.1 1.0 O B:HOH632 2.4 37.0 1.0 OD2 B:ASP202 2.5 44.8 1.0 OD1 B:ASP202 2.9 53.0 1.0 CG B:ASP202 3.0 41.4 1.0 PA B:UTP503 3.4 36.5 0.5 PB B:UTP503 3.4 27.7 0.6 O B:HOH690 3.5 38.1 1.0 PG B:UTP503 3.6 49.3 0.9 O3A B:UTP503 3.8 91.9 1.0 O3B B:UTP503 3.9 65.5 1.0 O2A B:UTP503 3.9 38.8 1.0 CA B:GLY187 4.0 20.9 1.0 N B:SER188 4.1 18.1 1.0 O B:HOH625 4.2 28.6 1.0 O B:HOH660 4.4 30.7 1.0 O B:HOH640 4.5 35.4 1.0 O1G B:UTP503 4.5 35.8 1.0 CB B:ASP202 4.5 29.4 1.0 OG B:SER188 4.5 29.8 1.0 O1B B:UTP503 4.5 34.5 1.0 O5' B:UTP503 4.5 57.9 1.0 C B:GLY187 4.6 21.4 1.0 O3G B:UTP503 4.6 52.6 1.0 C5' B:UTP503 4.9 62.5 1.0 CB B:SER188 5.0 19.0 1.0

F.Civril, T.Deimling, C.C.O.Mann, A.Ablasser, M.Moldt, G.Witte, V.Hornung, K.P.Hopfner. Structural Mechanism of Cytosolic Dna Sensing By Cgas Nature V. 498 332 2013.
ISSN: ISSN 0028-0836
PubMed: 23722159
DOI: 10.1038/NATURE12305